PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp5g20960 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | NAC | ||||||||
Protein Properties | Length: 631aa MW: 71820.9 Da PI: 6.3978 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 176.7 | 6.4e-55 | 6 | 134 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 +ppGfrFhPtdeelv +yLk+k++g+ +el e+i+e+d+yk+ePwdLp k + +++ ew+fFs+rd+ky++g+r+nratk+gyWkatgkd++v+s +++ Tp5g20960 6 MPPGFRFHPTDEELVIYYLKRKINGRIIEL-EIIPEIDLYKCEPWDLPgKsLLPSKDLEWFFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVTS-HSR 103 79***************************9.99***************6434555777**************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 vg+kktLv+y+grap+g++tdWvmheyrle Tp5g20960 104 IVGTKKTLVYYRGRAPHGSRTDWVMHEYRLE 134 *****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-63 | 4 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.863 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-29 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 631 aa Download sequence Send to blast |
MAPVSMPPGF RFHPTDEELV IYYLKRKING RIIELEIIPE IDLYKCEPWD LPGKSLLPSK 60 DLEWFFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVTS HSRIVGTKKT LVYYRGRAPH 120 GSRTDWVMHE YRLEEQECDS KSGIQDAYAL CRVFKKSALA NKLEEQQNHG TKRKKATTNS 180 EQSTSSTCLY SDGMYENLEN SGYPVSPDNG LTQLGNISSS DMETIENKWS QFMSHDTSFN 240 LPAQSEFCSQ YGTISYPPSK VEIALECARL QNRMLPPAPP LHVEELAHSE YLGNNVANDT 300 DEMLSKIIAL AQASHEPRNS LGSWEVASAS GNFHGDFNYS GEKFSGSWVE ANMKAVDMQE 360 HDERFKEERV IENLRWVGVS SKELEKSFIE EHSTVVPIED IWSYRRDDQE HEHQDGVGVN 420 NNGDVDDVYT LEFSENEHNA NSLDKINNND HDATCSPRFE MVKKVEVSHG LFVTTRQVTN 480 TFFQQIVPSQ TVLVYINPTG ADKCCHETTS MEEVHVLKQI NPRIDSILSK LLGPWRRFTY 540 VVGFIPMLLL MHCVHQGGNS TKNRRGDGDC NDRGTILTMK DDVMRTNIWK KKKKEKSMVD 600 VQGLRVEESF VLKKLGLSLA IILAVSTMCL I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-56 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-56 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-56 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-56 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-56 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-56 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00212 | DAP | Transfer from AT1G65910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp5g20960 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP002684 | 1e-110 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | F12P19 | 1e-110 | AC009513.2 Sequence of BAC F12P19 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009127458.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 86 | ||||
TrEMBL | V4KFM3 | 0.0 | V4KFM3_EUTSA; Uncharacterized protein | ||||
STRING | XP_006391326.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10112 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 0.0 | NAC domain containing protein 28 |