PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp5g18130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | C3H | ||||||||
Protein Properties | Length: 149aa MW: 16309.7 Da PI: 8.7172 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.7 | 5.3e-10 | 108 | 129 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 +C f+ ++G+Ck+G++CkF H Tp5g18130 108 QRCTFYVQYGFCKFGSTCKFDH 129 68******************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.967 | 105 | 132 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.36E-6 | 105 | 129 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-7 | 108 | 129 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-4 | 110 | 129 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MIVKVCSPHM ENRCGDLGGV VKRSQRDQAP LSPAPSSPPQ NVVGATSLYG LIQLSSTTPS 60 LPVVYPSLSF PTGVVQKEQT FPERPGKPER QYYLKKQEIV SLEHIGVQRC TFYVQYGFCK 120 FGSTCKFDHL SASPLADAPV APYPLSTHI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp5g18130 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001323622.1 | 1e-42 | Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||
Refseq | XP_020882914.1 | 2e-42 | zinc finger CCCH domain-containing protein 32 isoform X2 | ||||
Swissprot | Q84W91 | 7e-43 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A1P8AXN6 | 3e-41 | A0A1P8AXN6_ARATH; Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||
TrEMBL | D7LHC9 | 7e-41 | D7LHC9_ARALL; Zinc finger (CCCH-type) family protein | ||||
TrEMBL | R0HSN8 | 5e-41 | R0HSN8_9BRAS; Uncharacterized protein | ||||
STRING | scaffold_403761.1 | 1e-41 | (Arabidopsis lyrata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.2 | 2e-43 | C3H family protein |