PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g16980
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NAC
Protein Properties Length: 323aa    MW: 36691.1 Da    PI: 8.4623
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g16980genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM91.21.8e-285112751128
        NAM  51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                + ++++ew+fF+ r kky++g++++ratk gyWkatgk+++v+s ++ ++g+k+tLvf+ grapkg +t+W+mhey +
  Tp5g16980  51 IVKSDSEWFFFCARGKKYPHGSQNRRATKMGYWKATGKERNVKS-GTDVIGTKRTLVFHIGRAPKGGRTEWIMHEYCM 127
                445789**************************************.999****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100529.4091143IPR003441NAC domain
PfamPF023652.5E-1448126IPR003441NAC domain
SuperFamilySSF1019411.57E-2950142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MRFVCWKVCF GCTIGKAKPF DVYTWFAPTC SYTFCRLKRY ETALSFVNKS IVKSDSEWFF  60
FCARGKKYPH GSQNRRATKM GYWKATGKER NVKSGTDVIG TKRTLVFHIG RAPKGGRTEW  120
IMHEYCMIGV SLDARVICRL RRNTEFQGAT IQKPPPQPRL SLDKNANLQN ETVSESISGW  180
ENMIDFYLSS ESGHEVLSEI AESSQSSQNP QVPSEEDFYA DILRDDIVKL DDPSVSGNTL  240
INVPTLQSES TITRVLPLPS MVDKQMQSLL QKLPLQNDIG EEDNISMSSC FIGIYSIKSI  300
NRARWDVVAW VLVMIAVLVF YLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-224814367168NAC domain-containing protein 19
3swm_B2e-224814367168NAC domain-containing protein 19
3swm_C2e-224814367168NAC domain-containing protein 19
3swm_D2e-224814367168NAC domain-containing protein 19
3swp_A2e-224814367168NAC domain-containing protein 19
3swp_B2e-224814367168NAC domain-containing protein 19
3swp_C2e-224814367168NAC domain-containing protein 19
3swp_D2e-224814367168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcription factor involved in modulation of abscisic acid (ABA) signaling. Attenuates ABA sensitivity and glucose-induced ABA accumulation. Reduces the expression of ABI4 gene. {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:24625790}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g16980
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By glucose (PubMed:24625790). Induced by salt, drought stress and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:24625790}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747630.0KF974763.1 Brassica napus NAC transcription factor 60-1 (NAC60-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639422.10.0PREDICTED: NAC domain-containing protein 60 isoform X1
SwissprotQ9LXL90.0NAC60_ARATH; NAC domain-containing protein 60
TrEMBLA0A078G4K10.0A0A078G4K1_BRANA; BnaC01g23890D protein
TrEMBLA0A0D3A8I00.0A0A0D3A8I0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FDY00.0A0A3P6FDY0_BRAOL; Uncharacterized protein
STRINGBo1g063720.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43092356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44290.11e-172NAC domain containing protein 60
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]