PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp5g16850

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

NAC

Protein Properties

Length: 287aa MW: 32336.2 Da PI: 6.7822

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g16850	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	135.2	4.4e-42	5	135	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lp+GfrF Pt+eel+++yL+++++g + ++++ i+ +d+++veP +Lp+ +++++ ++w fF++r++++a+g r++r+t+sgyWkatg+ +v+s++ Tp5g16850 5 LPVGFRFYPTEEELISFYLRNQLDGGNATIHSLIPILDVFSVEPTQLPNlageRCRGDAEQWLFFVPRQEREARGGRPSRTTDSGYWKATGSPGPVISRD 104 79**************************999**********9656766667888************************************ PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyr 127 ++++g+kkt+vfy g+ap+g+kt+W m+ey+ Tp5g16850 105 NRVIGVKKTMVFYIGKAPTGRKTKWKMNEYK 135 ****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.66E-46	3	161	IPR003441	NAC domain
PROSITE profile	PS51005	47.234	5	161	IPR003441	NAC domain
Pfam	PF02365	1.4E-21	6	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MEEELPVGFR FYPTEEELIS FYLRNQLDGG NATIHSLIPI LDVFSVEPTQ LPNLAGERCR 60 GDAEQWLFFV PRQEREARGG RPSRTTDSGY WKATGSPGPV ISRDNRVIGV KKTMVFYIGK 120 APTGRKTKWK MNEYKAIHET ATVSTIPELR HECSICRIYI KSGSSRAFDR RPTEAYGIER 180 RLPRATLSTS YSRRDEVDLL VNATITRSNS EMVDGLSQLR ERKLPNNGVE SSSCATISIS 240 PETSYSGGGD QVQLPVNATT TQSNPELVDG LSQPFWEWEQ LNWSSTY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-33	5	166	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-33	5	166	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-33	5	166	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-33	5	166	17	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-33	5	166	20	173	NAC domain-containing protein 19
3swm_B	2e-33	5	166	20	173	NAC domain-containing protein 19
3swm_C	2e-33	5	166	20	173	NAC domain-containing protein 19
3swm_D	2e-33	5	166	20	173	NAC domain-containing protein 19
3swp_A	2e-33	5	166	20	173	NAC domain-containing protein 19
3swp_B	2e-33	5	166	20	173	NAC domain-containing protein 19
3swp_C	2e-33	5	166	20	173	NAC domain-containing protein 19
3swp_D	2e-33	5	166	20	173	NAC domain-containing protein 19
4dul_A	2e-33	5	166	17	170	NAC domain-containing protein 19
4dul_B	2e-33	5	166	17	170	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g16850

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL138641	2e-87	AL138641.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T22K7.
GenBank	CP002686	2e-87	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009150295.1	1e-167	PREDICTED: putative NAC domain-containing protein 61
Swissprot	Q9M290	1e-127	NAC61_ARATH; Putative NAC domain-containing protein 61
TrEMBL	A0A397YZT9	1e-165	A0A397YZT9_BRACM; Uncharacterized protein
TrEMBL	M4DSE9	1e-165	M4DSE9_BRARP; Uncharacterized protein
STRING	Bra019442.1-P	1e-166	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	1e-141	NAC domain containing protein 61