PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp5g16140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | GATA | ||||||||
Protein Properties | Length: 200aa MW: 22395.2 Da PI: 7.9968 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.6 | 1.5e-17 | 126 | 160 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cgt +TplWR+gp g+ tLCnaCG++yr +l Tp5g16140 126 CLHCGTRNTPLWREGPKGPGTLCNACGMRYRTGRL 160 99*****************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 5.6E-13 | 120 | 174 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.95E-14 | 123 | 182 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 7.3E-15 | 124 | 157 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.42E-16 | 125 | 174 | No hit | No description |
Pfam | PF00320 | 2.5E-15 | 126 | 160 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 126 | 151 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.453 | 126 | 156 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MEHKDVVVEE DLGTAIQNLE IPFTELEQNA FGFTDDGLGG IKEIIEDSNL LCYDSQELEN 60 SSHDVSIDDS VELKSFISSS DSPTALRGTS RVTKRPRNKR GRKKRACFNS PACLFESKVD 120 VTEKICLHCG TRNTPLWREG PKGPGTLCNA CGMRYRTGRL LPEYCPASSP NFKPNVHSNF 180 HRKVMKIRGN KNSPANNSWF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00391 | DAP | Transfer from AT3G45170 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp5g16140 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006419066.1 | 4e-71 | GATA transcription factor 14 | ||||
Refseq | XP_024009703.1 | 4e-71 | GATA transcription factor 14 | ||||
Swissprot | Q9M1U2 | 1e-68 | GAT14_ARATH; GATA transcription factor 14 | ||||
TrEMBL | V4L5F0 | 9e-70 | V4L5F0_EUTSA; Uncharacterized protein | ||||
STRING | Bostr.21132s0007.1.p | 8e-79 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16368 | 11 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45170.1 | 9e-64 | GATA transcription factor 14 |