PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g15530
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 164aa    MW: 17824.6 Da    PI: 9.2144
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g15530genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.5e-0581103123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++Cp+Cg  F+    L  H+r+H
  Tp5g15530  81 HTCPICGLEFPMGQALGGHMRKH 103
                79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.64E-728103No hitNo description
PfamPF139121.9E-112954IPR007087Zinc finger, C2H2
SMARTSM003550.963052IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.1823052IPR007087Zinc finger, C2H2
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
SMARTSM003550.03481103IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-981103IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.01481108IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MVEDTAANCL MLLTRVGECC GGDGGESRVF RCKTCMKEFS SFQALGGHRA SHRKLINNSS  60
DEQSSLSSGS VTKKTKKKTS HTCPICGLEF PMGQALGGHM RKHGKDKESG ALVTRSFLPE  120
AMITTTFTTL KKSSSGKRVA CWDLGLDPIE SMINLKLELG RTIY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g15530
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150251.14e-80PREDICTED: zinc finger protein ZAT8-like
RefseqXP_013646942.14e-80zinc finger protein ZAT8-like
SwissprotQ9LX851e-73ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLM4DSI48e-79M4DSI4_BRARP; Uncharacterized protein
STRINGBra019477.1-P1e-79(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.11e-57C2H2 family protein