PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp5g15520 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | MYB | ||||||||
Protein Properties | Length: 250aa MW: 28824.4 Da PI: 8.9807 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.6 | 5.7e-18 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed llv+ v+++G ++W+ Ia+ g++Rt+k+c++rw +yl Tp5g15520 8 KGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.6 | 9.4e-16 | 61 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E+ l +++ +++G++ W++Iar+++ gRt++++k++w++++ Tp5g15520 61 RGKMSPQEECLVLELQAKWGNR-WSKIARKLP-GRTDNEIKNYWRTHM 106 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.196 | 3 | 55 | IPR017930 | Myb domain |
SMART | SM00717 | 5.2E-16 | 7 | 57 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.24E-29 | 7 | 102 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.1E-17 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-20 | 9 | 61 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.13E-12 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 25.282 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 6.4E-16 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-14 | 61 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-22 | 62 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.87E-11 | 63 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MMQEENRKGP WTEQEDILLV NFVHLFGDRR WDFIAKVSGL NRTGKSCRLR WVNYLHPGLK 60 RGKMSPQEEC LVLELQAKWG NRWSKIARKL PGRTDNEIKN YWRTHMRKKA QEKKRPMSPT 120 SSLSNCCSSS MTTTNTQDTS FQSRKSSGKV SFYDTGGSTG ERNQETEDGF SMDDIWGEID 180 HSAVSIIKPV KDIYSEQSYC LSYPNLASPS WESSLDSIWK MDADKSKMSS FATDQFPFCF 240 QYSRTPWSSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-25 | 8 | 110 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 4e-25 | 8 | 110 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-25 | 8 | 110 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-25 | 8 | 110 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-25 | 8 | 110 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp5g15520 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC966738 | 0.0 | KC966738.1 Brassica napus MYB transcription factor 48 (MYB48.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013625304.1 | 1e-156 | PREDICTED: transcription factor MYB48 | ||||
Swissprot | Q9LX82 | 1e-148 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A0D3BHG5 | 1e-155 | A0A0D3BHG5_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6BGL9 | 1e-155 | A0A3P6BGL9_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g130340.1 | 1e-156 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2502 | 27 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 1e-145 | myb domain protein 48 |
Publications ? help Back to Top | |||
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