PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp5g14380

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

Dof

Protein Properties

Length: 439aa MW: 48487.9 Da PI: 7.6983

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g14380	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.1	1e-39	100	160	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+ss Tp5g14380 100 PTKILPCPRCKSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKSSS 160 67899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-31	97	157	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.0E-32	102	158	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.649	104	158	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	106	142	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MMMESRDPAI KLFGMKIPFP AVFESTVAAE DEYSGGDDES AEKQVTPELS EKKSNCKNNS 60 HDSKPETGDK EEATDQIENS DSPENNDNQQ TTDGKTLKKP TKILPCPRCK SMDTKFCYYN 120 NYNINQPRHF CKACQRYWTA GGTMRNVPVG AGRRKNKSSS SHYRHITISE ALEAARLDTG 180 LQANTRVLSF GLEAHQQHAA PMTPIMKLQG DQKVSNGARN GLADQRLVAR VENGDDCSSG 240 SSVTTSNNHS VDETRAQSCR VVEPQMNNNN NNMNGYACIP GVPWPYAWNP AMAPPGFYPP 300 PGYPMPFYPY WPIPMLSPNE SSSPMNQKGS SPNSPTLGKH SRDEETAREN NETERKQRNG 360 CVLVPKTLRI DDPNEAAKSS IWTTLGIKNE GSTLGGKGGM FKGFDQKTKK SNDDKAENTP 420 ILSSNPAALS RSLIFHERI

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MMMESRDPAI KLFGMKIPFP AVFESTVAAE DEYSGGDDES AEKQVTPELS EKKSNCKNNS  60
HDSKPETGDK EEATDQIENS DSPENNDNQQ TTDGKTLKKP TKILPCPRCK SMDTKFCYYN  120
NYNINQPRHF CKACQRYWTA GGTMRNVPVG AGRRKNKSSS SHYRHITISE ALEAARLDTG  180
LQANTRVLSF GLEAHQQHAA PMTPIMKLQG DQKVSNGARN GLADQRLVAR VENGDDCSSG  240
SSVTTSNNHS VDETRAQSCR VVEPQMNNNN NNMNGYACIP GVPWPYAWNP AMAPPGFYPP  300
PGYPMPFYPY WPIPMLSPNE SSSPMNQKGS SPNSPTLGKH SRDEETAREN NETERKQRNG  360
CVLVPKTLRI DDPNEAAKSS IWTTLGIKNE GSTLGGKGGM FKGFDQKTKK SNDDKAENTP  420
ILSSNPAALS RSLIFHERI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g14380

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002877565.1	0.0	cyclic dof factor 3
Swissprot	Q8LFV3	0.0	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A1J3GKX5	0.0	A0A1J3GKX5_NOCCA; Cyclic dof factor 3
STRING	Bostr.18473s0221.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5441	28	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	0.0	cycling DOF factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]