PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp5g13380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 242aa MW: 27072.4 Da PI: 5.5879 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 147 | 4.1e-46 | 44 | 145 | 2 | 100 |
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 l++fw +q +e+++dfknh++Pl ri++i+kad+dv+mis e+P+l++kacelfilelt+rsw ha e+k rtl+k+diaaa+trt +fdf+ di r Tp5g13380 44 LRMFWFYQrkeVEQVSDFKNHQVPLQRIRRIMKADDDVRMISPEVPILFAKACELFILELTIRSWFHALEKKSRTLQKNDIAAAITRTATFDFMEDIATR 143 899**9888889**************************************************************************************99 PP NF-YC 99 de 100 d+ Tp5g13380 144 DD 145 97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.02E-26 | 25 | 137 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.1E-30 | 57 | 129 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.5E-16 | 66 | 128 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence Send to blast |
MDNYSQQPPP SAFGIPPLPP GISVFAAGVA SYHHHLQQQQ QQYLRMFWFY QRKEVEQVSD 60 FKNHQVPLQR IRRIMKADDD VRMISPEVPI LFAKACELFI LELTIRSWFH ALEKKSRTLQ 120 KNDIAAAITR TATFDFMEDI ATRDDENKEE PGTEGMMTPA ASCVPYYYPP VGQPTGPGGM 180 WQRSRGQGNL DGQMDQSGVY FQPPSQGWQS FGQTFLLSSP TGDDVSHGSG GSIGQGNLDG 240 QV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-41 | 51 | 143 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp5g13380 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006290279.1 | 2e-92 | nuclear transcription factor Y subunit C-1 | ||||
Swissprot | Q9FMV5 | 9e-82 | NFYC4_ARATH; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | R0FL35 | 6e-91 | R0FL35_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0134s0008.1.p | 1e-92 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM478 | 28 | 160 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G63470.2 | 2e-80 | nuclear factor Y, subunit C4 |