PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g13130
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 265aa    MW: 30375.2 Da    PI: 9.1389
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g13130genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.2e-152067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l   v ++G g+W++I+   g+ R +k+c++rw +yl
        Tp5g13130 20 KGLWSPEEDEKLRSHVLKYGHGCWSSIPIQAGLQRNGKSCRLRWVNYL 67
                     678*******************************************97 PP
2Myb_DNA-binding49.78.5e-1673118148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g +T+eE   l+ ++  lG++ W+ I+++++ gRt++++k++w++yl
        Tp5g13130  73 KGVFTKEEKTSLLSLHSILGNK-WSQISKYLP-GRTDNEIKNYWHSYL 118
                      789*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-221470IPR009057Homeodomain-like
PROSITE profilePS5129416.8031567IPR017930Myb domain
SuperFamilySSF466896.74E-3019114IPR009057Homeodomain-like
SMARTSM007171.2E-111969IPR001005SANT/Myb domain
PfamPF002494.8E-142067IPR001005SANT/Myb domain
CDDcd001677.44E-102367No hitNo description
PROSITE profilePS5129423.55368122IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2471123IPR009057Homeodomain-like
SMARTSM007176.1E-1572120IPR001005SANT/Myb domain
PfamPF002491.6E-1473118IPR001005SANT/Myb domain
CDDcd001674.84E-1076118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MVFKSEKANK KLKSKEKQRK GLWSPEEDEK LRSHVLKYGH GCWSSIPIQA GLQRNGKSCR  60
LRWVNYLRPG LKKGVFTKEE KTSLLSLHSI LGNKWSQISK YLPGRTDNEI KNYWHSYLKK  120
STTWKQHEEA TRTRQSQTHS ITNSLKALES TTGRSSSLIN VIGDSCNAKV PSFLPSLVFS  180
EWLDHNLVMD QPPQTSSVAQ DLFVPEERGF SGTSGQRFHE NNNSFGDFIP NLDFLFDDEI  240
SEIEFCTSFS DNFLFDGLIS EQRSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-242012227128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g13130
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404203.11e-149transcription factor LAF1
TrEMBLV4NHJ31e-148V4NHJ3_EUTSA; Uncharacterized protein
STRINGXP_006404203.11e-149(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48920.11e-127myb domain protein 45