PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g12580
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NAC
Protein Properties Length: 410aa    MW: 46041.4 Da    PI: 6.0728
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g12580genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.32.2e-51131411128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                lp+G+rF+Ptdeelv +yL++k++g++ ++ ++i+e+d++k+ePwdLp  + +k++++ew fF++ d+ky++g+r+nrat++gyWkatgkd++++s k++
  Tp5g12580  13 LPVGLRFRPTDEELVRFYLRRKINGHDDDV-KAISEIDVCKWEPWDLPdySVIKTKDSEWLFFCPLDRKYPSGSRQNRATTAGYWKATGKDRKIKSGKNN 111
                799************************999.89**************96448888999**************************************9999 PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                 +g+k+tLvf++grapkg++t+Wvmheyr+
  Tp5g12580 112 IIGVKRTLVFHTGRAPKGTRTNWVMHEYRA 141
                ****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-589164IPR003441NAC domain
PROSITE profilePS5100555.24613164IPR003441NAC domain
PfamPF023657.4E-2614140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009814Biological Processdefense response, incompatible interaction
GO:0010200Biological Processresponse to chitin
GO:0070417Biological Processcellular response to cold
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MNQNIKVLSL DSLPVGLRFR PTDEELVRFY LRRKINGHDD DVKAISEIDV CKWEPWDLPD  60
YSVIKTKDSE WLFFCPLDRK YPSGSRQNRA TTAGYWKATG KDRKIKSGKN NIIGVKRTLV  120
FHTGRAPKGT RTNWVMHEYR ATEKDLSGTN PGQSPFVICK LFKKQDLNLA DEDSKLDEVE  180
PAVSSPTVAT CSPDETKSEI SMVAKTEDLK RYDIAESSHV ISGDGACNEP TTAELGDLDW  240
LSFPELEPLN YTMFSPLHSQ VQSELGSSFN PFQSGSSGNH NNSYQIQTQY GTNELDTYIS  300
DFLDTILDLP DEVPEKQKFV LQCGIGGAVP DQTASAYQHR SAGDMSDDIS RTGIKLQTRR  360
EQNSGCATDY IIHGNASRRL RLQSNLHGIS SKNPELQTIK REVRITTTFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-4831657166NO APICAL MERISTEM PROTEIN
1ut4_B9e-4831657166NO APICAL MERISTEM PROTEIN
1ut7_A9e-4831657166NO APICAL MERISTEM PROTEIN
1ut7_B9e-4831657166NO APICAL MERISTEM PROTEIN
3swm_A1e-47316510169NAC domain-containing protein 19
3swm_B1e-47316510169NAC domain-containing protein 19
3swm_C1e-47316510169NAC domain-containing protein 19
3swm_D1e-47316510169NAC domain-containing protein 19
3swp_A1e-47316510169NAC domain-containing protein 19
3swp_B1e-47316510169NAC domain-containing protein 19
3swp_C1e-47316510169NAC domain-containing protein 19
3swp_D1e-47316510169NAC domain-containing protein 19
4dul_A9e-4831657166NAC domain-containing protein 19
4dul_B9e-4831657166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:20156199, PubMed:19947982). Transcriptional activator involved in response to cold stress. Mediates induction of pathogenesis-related (PR) genes independently of salicylic signaling in response to cold. Binds directly to the PR gene promoters and enhances plant resistance to pathogen infection, incorporating cold signals into pathogen resistance responses (PubMed:19947982). Plays a regulatory role in abscisic acid (ABA)-mediated drought-resistance response (PubMed:22967043). {ECO:0000269|PubMed:19947982, ECO:0000269|PubMed:20156199, ECO:0000269|PubMed:22967043}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00398DAPTransfer from AT3G49530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g12580
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, drought stress, abscisic acid (ABA), salicylic acid (SA) and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404132.10.0NAC domain-containing protein 62
SwissprotQ9SCK60.0NAC62_ARATH; NAC domain-containing protein 62
TrEMBLV4L5I20.0V4L5I2_EUTSA; Uncharacterized protein
STRINGXP_006404132.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24162873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.10.0NAC domain containing protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]