PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g12180
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 228aa    MW: 24452.6 Da    PI: 7.3584
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g12180genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84.1e-0593115123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ykC+ CgksF++   L  H  +H
  Tp5g12180  93 YKCSVCGKSFPSYQALGGHKTSH 115
                9***********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.4E-1092115No hitNo description
PROSITE profilePS5015710.74193115IPR007087Zinc finger, C2H2
SMARTSM003550.002293115IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-1493117IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-493115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
SuperFamilySSF576676.4E-10150177No hitNo description
PfamPF139124.7E-12154179IPR007087Zinc finger, C2H2
SMARTSM003550.35155177IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.12155177IPR007087Zinc finger, C2H2
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MALDTLNSPT STTIATAPPP FLTKPENLES WTKRKRTKRH RMIDQSNPPS EEEYLALCLL  60
MLARGSSDDD DGDHHSPPSP PPLTPSDHHH RDYKCSVCGK SFPSYQALGG HKTSHRKPVG  120
NNNNNDDGNN NSGNGSVTNN GNISNGLIGQ SGKTHKCSIC FKSFPSGQAL GGHKRCHYDG  180
GNGNGNGNGN RNGNNNHGFD LNLPADQVLD DETLGKSQLS GEETKSAL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00399DAPTransfer from AT3G49930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g12180
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329782e-52AL132978.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F3A4.
GenBankBT0293772e-52BT029377.1 Arabidopsis thaliana At3g49930 mRNA, complete cds.
GenBankCP0026862e-52CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596326.11e-114PREDICTED: LOW QUALITY PROTEIN: zinc finger protein AZF1
SwissprotQ9SSW16e-62AZF1_ARATH; Zinc finger protein AZF1
TrEMBLA0A1J3CGS11e-114A0A1J3CGS1_NOCCA; Zinc finger protein AZF1 (Fragment)
STRINGBra012914.1-P1e-111(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.14e-74C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]