PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp5g11130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | GATA | ||||||||
Protein Properties | Length: 308aa MW: 34278.8 Da PI: 5.0307 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.8 | 3.4e-19 | 231 | 265 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR+gp g ktLCnaCG++y++ +l Tp5g11130 231 CSHCGVQKTPQWREGPLGAKTLCNACGVRYKSGRL 265 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 1.4E-88 | 34 | 308 | IPR016679 | Transcription factor, GATA, plant |
SuperFamily | SSF57716 | 2.09E-14 | 224 | 287 | No hit | No description |
PROSITE profile | PS50114 | 12.255 | 225 | 261 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 7.2E-16 | 225 | 279 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 6.7E-15 | 229 | 263 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.40E-15 | 230 | 278 | No hit | No description |
Pfam | PF00320 | 3.4E-17 | 231 | 265 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 231 | 256 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MALKNSNRKE KAVTDVAHND DEFDVDDLLD FSNDDEFDVD DLLDFSNDDI FVDDDADLET 60 QRNCGVSDEI TLHRSNDLST AGEDVEPLLS SSLAVPTDNL EDFDWFTNIV DDSFTPYWAP 120 TKKPALLTGD RRDPVEPVKE ESCFKPPLPV KSRTKRGRTR VSVWSLGSSS LNDSSSSSTT 180 SSSSSSAPSS PLWLSGAEIL DETVVNRQKK MNKKKNVMKN GGQTQTQTRR CSHCGVQKTP 240 QWREGPLGAK TLCNACGVRY KSGRLLPEYR PACSPTFSSE LHSNHHRKVI EMRRKKKTSD 300 DANEPGSN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00404 | DAP | Transfer from AT3G51080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp5g11130 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009149294.1 | 1e-113 | PREDICTED: erythroid transcription factor isoform X1 | ||||
Refseq | XP_013619181.1 | 1e-113 | PREDICTED: GATA transcription factor 6-like | ||||
Refseq | XP_018515391.1 | 1e-113 | PREDICTED: erythroid transcription factor isoform X1 | ||||
Swissprot | Q9SD38 | 1e-110 | GATA6_ARATH; GATA transcription factor 6 | ||||
TrEMBL | A0A1J3FIG8 | 1e-114 | A0A1J3FIG8_NOCCA; GATA transcription factor | ||||
TrEMBL | A0A1J3HRQ6 | 1e-114 | A0A1J3HRQ6_NOCCA; GATA transcription factor 6 (Fragment) | ||||
STRING | Bra038882.1-P | 1e-112 | (Brassica rapa) | ||||
STRING | Bo1g060480.1 | 1e-112 | (Brassica oleracea) | ||||
STRING | Bostr.6864s0136.1.p | 1e-112 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3698 | 25 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51080.1 | 3e-81 | GATA transcription factor 6 |
Publications ? help Back to Top | |||
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