PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g09420
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GRF
Protein Properties Length: 377aa    MW: 42223.4 Da    PI: 7.753
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g09420genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC802.1e-25146190145
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                d+epgrC+RtDGKkWRCsr+v++g+k+C+rH+hrgr+rsrk++e+
  Tp5g09420 146 DPEPGRCKRTDGKKWRCSRDVVGGHKYCDRHIHRGRNRSRKPVET 190
                79****************************************986 PP
2QLQ53.85.9e-1978112337
        QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                F++aQ+q+L+ Q+l+y+y++a++ vP+eLl++i+k
  Tp5g09420  78 FSWAQWQELELQALIYRYMLAGASVPQELLLPIKK 112
                *********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009518.6E-1276112IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.41277112IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.6E-1378110IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.647146190IPR014977WRC domain
PfamPF088793.7E-21147189IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MDLQLKQWRS QQQNESEEQS SATKISHFCF DQIQSQTATS AAALPLFVPE PTSSSSFSCF  60
SPDSSSSSSR FLKMGNFFSW AQWQELELQA LIYRYMLAGA SVPQELLLPI KKSLFHQSPL  120
NFLHHPLQHN FPHHQPSWYW GRGAMDPEPG RCKRTDGKKW RCSRDVVGGH KYCDRHIHRG  180
RNRSRKPVET ATTNAATTAA SSFVLGEELG RGPNNLFFSG SSHSSTQHLH LNSHQSCSSE  240
MKQESNNNNK RPYEAHNGFS NGRSDDGHIL RHFFDDWPRS SDSTSSPMSS STCHLSISMP  300
GNASSDVSLK LSTGNEEDEA NMRNNNNNEK EHQQSMNWWS SGGNHHNMGG PLAEALRSAS  360
STSSVLHQMG ISTQVFH
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g09420
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1026370.0AY102637.1 Arabidopsis thaliana transcription activator (GRF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018491813.10.0PREDICTED: growth-regulating factor 4
SwissprotQ8L8A70.0GRF4_ARATH; Growth-regulating factor 4
TrEMBLA0A3N6S4R90.0A0A3N6S4R9_BRACR; Uncharacterized protein
STRINGBo8g082350.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19262667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.11e-174growth-regulating factor 4
Publications ? help Back to Top
  1. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]