PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g09020
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 286aa    MW: 32294.7 Da    PI: 4.2385
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g09020genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.65.5e-1913101197
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                ffkv+   + ++s  + +p +f e+ + +   ++t +l+ + g  W+v +  +k ++r ++t+GW++F+++++Lk+g+f++F +dg ++f   v+vf
  Tp5g09020  13 FFKVF--LSETASESMAIPMSFNEHLEDP--LPQTAKLQGTGGGIWTVSF--TKIRDRAYFTAGWSKFAEDHDLKDGEFLTFVFDGYHTF--EVSVF 101
                88999..666777779******9655655..889****************..*******************************9998888..67666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.56311104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.4E-2211104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-2311106IPR015300DNA-binding pseudobarrel domain
CDDcd100171.02E-1911101No hitNo description
SMARTSM010191.1E-2013104IPR003340B3 DNA binding domain
PfamPF023621.2E-1513100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-5192272IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-9192271IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.24195283IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MAENEDDILL PRFFKVFLSE TASESMAIPM SFNEHLEDPL PQTAKLQGTG GGIWTVSFTK  60
IRDRAYFTAG WSKFAEDHDL KDGEFLTFVF DGYHTFEVSV FGRCGCKETR AVAETVDLSD  120
SDSNDGEKGE EDPSVDADSD EEEEEEDDLS VDAGGDCLFG EDEEVSQSIY PVESEEMESD  180
AAGISNLEVT ANPRFTTNLK NRIYELLIPA NVVKDHGLRF GKSIKYIDEE GVMEGEKGKW  240
ADDRICFKGW DRICRRNRLR EHDTVDCEML HTRKKVHSIK ITITRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-191210610104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g09020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892693e-80AC189269.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023B16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442734.11e-146PREDICTED: B3 domain-containing protein REM20-like isoform X1
SwissprotQ8LAV51e-101REM20_ARATH; B3 domain-containing protein REM20
TrEMBLA0A078FJC51e-140A0A078FJC5_BRANA; BnaC06g14560D protein
STRINGBo6g067300.11e-140(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.11e-101B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]