PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g09000
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NF-YB
Protein Properties Length: 625aa    MW: 70769.6 Da    PI: 7.2737
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g09000genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB182.43.8e-57476573198
      NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegekk 98 
                vreqdrflPian+srimk+ lPan+ki+kdaket+qecvsefisf+tseasdkcqrekrktingddllwa++tlGfedyveplkvyl++yre+eg++k
  Tp5g09000 476 VREQDRFLPIANISRIMKRGLPANGKIAKDAKETMQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLMRYREMEGDNK 573
                59*********************************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.8E-54474591IPR009072Histone-fold
SuperFamilySSF471132.95E-40479582IPR009072Histone-fold
PfamPF008084.5E-27482546IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.1E-19510528No hitNo description
PROSITE patternPS006850513529IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.1E-19529547No hitNo description
PRINTSPR006151.1E-19548566No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MPNPKSRPSS LELPQKKSSL PAPKLARRLK PSGVESDLKT KTSPKTHIPK VATLDRRSPR  60
IPLNEIQKKR TGRIPELESQ VSQLQEELKK AKEELNRSEI LKREAQEEAK DTKQQLMEIN  120
ASEDSRIEEL RKLSQKRDKT WQSELEAMQR QHGMDSATLS SAINEVQKLK SKLFECESEL  180
ENSKFEVRSL QKLVRQLEEE RTNRRDSPSS STEMENMKEA MNLARQEISQ LKSAVEVAET  240
RYQDEYIQST LQIRSAYEQT EAVKSKYSQR EAELAEDLRT TRAEIEVLRK GLMDKKKEYE  300
STGDLKKLES DFMEVRRSLM DKEMELQSLR NEMEKKVETA NTKAMEAELR RVKVQCEQWR  360
KAAETAASIL NNDEERTDII ENGKMLKKFD DHSFSLLPSP ASDQSLSPSP FSSNQPYSPL  420
LCSPALFSNH LSSHLFALSG ISEMTDSQAK SSGMSPGGGG GSHESGGDQS PRSLNVREQD  480
RFLPIANISR IMKRGLPANG KIAKDAKETM QECVSEFISF ITSEASDKCQ REKRKTINGD  540
DLLWAMTTLG FEDYVEPLKV YLMRYREMEG DNKGSAKSGE SSAKRDGQPS QVAQFPQHGH  600
QGSFSQGPYG NSQASHMMVQ MPNAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-44476567192Transcription factor HapC (Eurofung)
4g92_B1e-44476567192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtROP effector binding specifically activated ROPs and linking them to the microtubule cytoskeleton. Involved in ROP-regulated polar growth. Involved in local disassembly of cortical microtubules when associated with ARAC10 and KIN13A and conversely mediates also the elimination of ARAC10 from the plasma membrane by the cortical microtubules. Accumulates at the plus end of shrinking microtubules. Targets KIN13A to microtubules. {ECO:0000269|PubMed:20619818, ECO:0000269|PubMed:20832900, ECO:0000269|PubMed:22984069, ECO:0000269|PubMed:24280391}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g09000
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882398.10.0interactor of constitutive active ROPs 5
SwissprotQ8VYU80.0ICR5_ARATH; Interactor of constitutive active ROPs 5
TrEMBLA0A178VBU90.0A0A178VBU9_ARATH; RIP4
STRINGBostr.11793s0060.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.13e-92nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Li S,Gu Y,Yan A,Lord E,Yang ZB
    RIP1 (ROP Interactive Partner 1)/ICR1 marks pollen germination sites and may act in the ROP1 pathway in the control of polarized pollen growth.
    Mol Plant, 2008. 1(6): p. 1021-35
    [PMID:19825600]
  2. Oda Y,Iida Y,Kondo Y,Fukuda H
    Wood cell-wall structure requires local 2D-microtubule disassembly by a novel plasma membrane-anchored protein.
    Curr. Biol., 2010. 20(13): p. 1197-202
    [PMID:20619818]
  3. Mucha E,Hoefle C,Hückelhoven R,Berken A
    RIP3 and AtKinesin-13A - a novel interaction linking Rho proteins of plants to microtubules.
    Eur. J. Cell Biol., 2010. 89(12): p. 906-16
    [PMID:20832900]
  4. Oda Y,Fukuda H
    Initiation of cell wall pattern by a Rho- and microtubule-driven symmetry breaking.
    Science, 2012. 337(6100): p. 1333-6
    [PMID:22984069]
  5. Oda Y,Fukuda H
    Rho of plant GTPase signaling regulates the behavior of Arabidopsis kinesin-13A to establish secondary cell wall patterns.
    Plant Cell, 2013. 25(11): p. 4439-50
    [PMID:24280391]