PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp5g07990 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | SRS | ||||||||
Protein Properties | Length: 251aa MW: 27289.8 Da PI: 10.3375 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 170.2 | 1.1e-52 | 95 | 241 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelets 103 ++ C+dCGn+akk+C +eRCRtCCksrg++CathvkstWvp++ +++++ ++ ++s++++++k+ + + k ++ +s + +s+++s++e++++ Tp5g07990 95 EEKVCRDCGNRAKKECLFERCRTCCKSRGYNCATHVKSTWVPSSSSSSHHRSTSR-----TSSSSSDRKKKLKIS-DKPTNPASVSFVSTTTSRQETSFK 188 6789***************************************998886433322.....222233333333332.333333444555666666666666 PP DUF702 104 s.lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 + lP +++++avf+++rv+++++ +++e++Yq++v+i+GhvfkG+L+++G+++ Tp5g07990 189 EgLPGKIEAPAVFKRTRVTAISNnEQAEIGYQATVTISGHVFKGFLHYHGVDH 241 66*******************9868899***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 4.0E-47 | 97 | 240 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.5E-26 | 98 | 138 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 4.7E-28 | 191 | 239 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MAKKPIYAVA NPPSLLSWPP QQQPSSSSTP FSVAANIPDH SSVSAAGIST PDYMLGLRNI 60 ILLPPPAPQI TQLSPSPVNF AAVEGNNRSR NNNVEEKVCR DCGNRAKKEC LFERCRTCCK 120 SRGYNCATHV KSTWVPSSSS SSHHRSTSRT SSSSSDRKKK LKISDKPTNP ASVSFVSTTT 180 SRQETSFKEG LPGKIEAPAV FKRTRVTAIS NNEQAEIGYQ ATVTISGHVF KGFLHYHGVD 240 HNKAFPCLSK K |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp5g07990 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF446889 | 2e-74 | AF446889.1 Arabidopsis thaliana AT3g54430/T12E18_120 mRNA, complete cds. | |||
GenBank | AY052675 | 2e-74 | AY052675.1 Arabidopsis thaliana AT3g54430/T12E18_120 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009116129.2 | 1e-119 | PREDICTED: protein SHI RELATED SEQUENCE 6-like | ||||
Swissprot | Q9M2U4 | 6e-98 | SRS6_ARATH; Protein SHI RELATED SEQUENCE 6 | ||||
TrEMBL | M4CS80 | 1e-118 | M4CS80_BRARP; Uncharacterized protein | ||||
STRING | Bra007072.1-P | 1e-118 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11959 | 23 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54430.1 | 3e-98 | SHI-related sequence 6 |
Publications ? help Back to Top | |||
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