PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp5g06550

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

C3H

Protein Properties

Length: 582aa MW: 64141.3 Da PI: 7.3742

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g06550	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.8	3.9e-08	256	276	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd+C +aHg Tp5g06550 256 PCPEFRK-GSCPKGDSCEYAHG 276 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	5.13E-13	46	172	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.584	70	172	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0025	70	100	IPR002110	Ankyrin repeat
Pfam	PF13637	3.0E-6	71	123	No hit	No description
Gene3D	G3DSA:1.25.40.20	7.5E-14	71	174	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.04E-12	72	168	No hit	No description
SMART	SM00248	6.5	105	140	IPR002110	Ankyrin repeat
SMART	SM00356	6.3E-5	251	277	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.976	251	278	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.9E-6	256	277	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-5	256	276	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.2E-4	283	315	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.812	286	310	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	43	286	309	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence Send to blast
MCSGPKSNLC SSKTLAEIEL KKEETMVLLE FAACDDLQSF QREIEEKEVD LDETGLWYCR 60 RVGSNQMGLE ERTPLMVAAM YGSKKVLNFI ISTGKSDVNR VCGEERVTAL HCAVAGCSVN 120 MIEVINTLLD ASALANSVDA NGNQPLDLFV RVSRFVATPR KKAVELLLRG GAFVGGGLIN 180 EAVEEEIKIV SKYPADASLP DINEGVYGSD EFRMYSFKVK PCSRAYSHDW TECAFVHPGE 240 NARRRDPRKY PYTCVPCPEF RKGSCPKGDS CEYAHGVFES WLHPAQYKTR LCKDETGCAR 300 KVCFFAHKRE EMRPVNASTG SAVAQSPFNS LEMMPGLSPL AYSSGVSTPP VSPMANSVGS 360 SPRNGGSWQN RVNTLTPPAL QLNGGSRLKS TLSARDMDID MEMEMRLRGF NNAEETFGSY 420 VSSPSRNSQM GQNMNQHYPS SPVRQPPPHH GFDSSAAVAA AVMNARSSAF AKRSLSFKPA 480 AQAAPPSNLS DWGSPSGKLE WGMQGDELNK MRRSVSFGIH GNNNSNNNSN AARDYRNEPD 540 VSWVNSLVKE NVVSERGFGM NERVRIMSWA EQMYREKEQT VA

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence Send to blast

MCSGPKSNLC SSKTLAEIEL KKEETMVLLE FAACDDLQSF QREIEEKEVD LDETGLWYCR  60
RVGSNQMGLE ERTPLMVAAM YGSKKVLNFI ISTGKSDVNR VCGEERVTAL HCAVAGCSVN  120
MIEVINTLLD ASALANSVDA NGNQPLDLFV RVSRFVATPR KKAVELLLRG GAFVGGGLIN  180
EAVEEEIKIV SKYPADASLP DINEGVYGSD EFRMYSFKVK PCSRAYSHDW TECAFVHPGE  240
NARRRDPRKY PYTCVPCPEF RKGSCPKGDS CEYAHGVFES WLHPAQYKTR LCKDETGCAR  300
KVCFFAHKRE EMRPVNASTG SAVAQSPFNS LEMMPGLSPL AYSSGVSTPP VSPMANSVGS  360
SPRNGGSWQN RVNTLTPPAL QLNGGSRLKS TLSARDMDID MEMEMRLRGF NNAEETFGSY  420
VSSPSRNSQM GQNMNQHYPS SPVRQPPPHH GFDSSAAVAA AVMNARSSAF AKRSLSFKPA  480
AQAAPPSNLS DWGSPSGKLE WGMQGDELNK MRRSVSFGIH GNNNSNNNSN AARDYRNEPD  540
VSWVNSLVKE NVVSERGFGM NERVRIMSWA EQMYREKEQT VA

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269\|PubMed:17609218}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g06550

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt stress. {ECO:0000269\|PubMed:17609218}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK226861	0.0	AK226861.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL08-18-O11.
GenBank	AL163832	0.0	AL163832.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F27K19.
GenBank	AY056282	0.0	AY056282.1 Arabidopsis thaliana unknown protein (At3g55980) mRNA, complete cds.
GenBank	BT008625	0.0	BT008625.1 Arabidopsis thaliana clone RAFL09-89-N11 (R19914) unknown protein (At3g55980) mRNA, complete cds.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020880437.1	0.0	zinc finger CCCH domain-containing protein 47
Swissprot	Q93ZS9	0.0	C3H47_ARATH; Zinc finger CCCH domain-containing protein 47
TrEMBL	V4NEL1	0.0	V4NEL1_EUTSA; Uncharacterized protein
STRING	XP_006403038.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM877	26	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55980.1	0.0	salt-inducible zinc finger 1

Publications ? help Back to Top
LeBlanc M,Kim G,Patel B,Stromberg V,Westwood J Quantification of tomato and Arabidopsis mobile RNAs trafficking into the parasitic plant Cuscuta pentagona. New Phytol., 2013. 200(4): p. 1225-33 [PMID:23914903] Liang Y,Gao Y,Jones AM Extra Large G-Protein Interactome Reveals Multiple Stress Response Function and Partner-Dependent XLG Subcellular Localization. Front Plant Sci, 2017. 8: p. 1015 [PMID:28659958]