PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g04960
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 377aa    MW: 42596.3 Da    PI: 6.8791
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g04960genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.3e-05211230120
                EEETTTTEEESSHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                ++Cp C k+F+r  n++ H+
  Tp5g04960 211 FSCPVCFKTFNRYNNMQMHM 230
                89*****************9 PP
2zf-C2H214.40.00011295317123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C +Cgk F  + + ++H +++
  Tp5g04960 295 FMCRKCGKAFAVRGDWRTHEKNC 317
                89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.64211238IPR007087Zinc finger, C2H2
SMARTSM003550.38211233IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.5E-6211230IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280213233IPR007087Zinc finger, C2H2
SuperFamilySSF576671.84E-6277315No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5291315IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808295315IPR007087Zinc finger, C2H2
SMARTSM0035549295315IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MTDPYSNFFT DWFKSNPFHH YPNSSTNPSP PPPPPPSSFF FFPHSGDLRR PPPPPTPPPS  60
PPLREALPLL SLSPANKQQD HHDHLIQEPP STSMDVDYDH HHHPDDHNLD EDDHDVTVAL  120
HIGLPSPSTR EMTSLLMMSS SSSSSRTTHH HENMNDKKDL DSDYHHGAAG GGEDEDDDSV  180
GGDGGCRISR LNKGQYWIPT PSQILIGPTQ FSCPVCFKTF NRYNNMQMHM WGHGSQYRKG  240
PESLRGTQPT GMLRLPCYCC APGCRNNIDH PRAKPLKDFR TLQTHYKRKH GIKPFMCRKC  300
GKAFAVRGDW RTHEKNCGKL WYCICGSDFK HKRSLKDHIK AFGNGHGAYG IDGFDEEDEP  360
ASEVEQLDND HDSMQSK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g04960
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2544470.0AF254447.1 Arabidopsis thaliana WIP2 protein (WIP2) mRNA, complete cds.
GenBankBT0210890.0BT021089.1 Arabidopsis thaliana At3g57670 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010516391.10.0PREDICTED: zinc finger protein WIP2-like isoform X1
RefseqXP_010516392.10.0PREDICTED: zinc finger protein WIP2-like isoform X2
SwissprotQ9SVY10.0ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A178VLW50.0A0A178VLW5_ARATH; WIP2
STRINGXP_010516391.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-170C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]