PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g04220
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Trihelix
Protein Properties Length: 320aa    MW: 35871.4 Da    PI: 9.9511
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g04220genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix40.85.9e-1326126186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkr..tsessstcpyfdql 85 
                +W+++ + +Li+a   +  +l+rg+l++++W+ev++++             ++ +  r+ +qCk++++ l+k+yk +k++ ++    +  +s +p+f+ l
  Tp5g04220  26 CWSEEATFTLIQAWGCRYVDLSRGNLRQKHWQEVANAVndrhfntgrnvsaAKSQPYRTDVQCKNRIDTLKKKYKVEKARVSESipGAAYVSPWPFFSAL 125
                7************************************************997777789*******************9998887333666789****999 PP

   trihelix  86 e 86 
                +
  Tp5g04220 126 D 126
                7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.9E-2324128No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MKDAVNDSFS PGSSRPSPST LSREDCWSEE ATFTLIQAWG CRYVDLSRGN LRQKHWQEVA  60
NAVNDRHFNT GRNVSAAKSQ PYRTDVQCKN RIDTLKKKYK VEKARVSESI PGAAYVSPWP  120
FFSALDDLLR ESFPTSTTPD STDNQRPSLP MSIIPVPVAP RSAIPRRPAP APAIMPLGGD  180
NLLGFRGNLN AFAAAAAAAA SPAYEDDSEG SRSRSSGRSG GNKKRQREIE QKQGYKEVAE  240
AIERLGQIYE RVEERKRKEM VELEKQRMRF AKELECHRMQ LFTEMQVRLH KLRRTSGSKG  300
PTSSASAALE YGMMDFPSYF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g04220
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532440.0AK353244.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-O01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_191422.20.0sequence-specific DNA binding transcription factor
TrEMBLA0A1J3HEN30.0A0A1J3HEN3_NOCCA; Trihelix transcription factor ASIL2
STRINGAT3G58630.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96352334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-141sequence-specific DNA binding transcription factors