PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g03570
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Nin-like
Protein Properties Length: 909aa    MW: 100524 Da    PI: 5.4371
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g03570genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.37.1e-29557607252
     RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                ek++sl++l++yFs+++kdAAk+Lgvc+T+LKriCRq+G++RWP+Rki+++
  Tp5g03570 557 EKNMSLNVLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGVMRWPSRKINKV 607
                89***********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.052541627IPR003035RWP-RK domain
PfamPF020421.1E-26559607IPR003035RWP-RK domain
SuperFamilySSF542771.93E-21804893No hitNo description
PROSITE profilePS5174519.253807890IPR000270PB1 domain
SMARTSM006661.1E-23807890IPR000270PB1 domain
CDDcd064071.88E-32808889No hitNo description
Gene3DG3DSA:3.10.20.2401.7E-23808887No hitNo description
PfamPF005644.7E-18809889IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    Send to blast
MENLSASREK GFCFPDVPTE EMDGLVKNLI SEENMFSSSS SSTSELMNFE SFASWCNTPF  60
ATDVLFTQYG LSTSQSTTTP TPFGTLHLDP SRSLHGLEGC YVGEKRPVQE MSSQFYCLSD  120
TQKMTGKRSK SSNLTGAIDC SVPRSLSHSL DEKMLKALSL FMEFSGEGLL AQFWAPVKTG  180
DQYMLSTCDQ AYLLDSRLSG YREASRKFTF SAEANQYSSP GLPGRVFLSG VPEWTSNVIY  240
YKTAEYLRMK HALDNNVRGS IAIPILEASG TSCCAVLELV TCREKLNFDL EMDSVCHVLQ  300
AVNLQTSTIP RRQYLSSNQK EALAEIRDVL RAVCHAHRLP LALAWIPCSY SKGANDELVK  360
VYGKSSDESS LLCIEETACY VNDMEMEGFV NACLEHYLRE GQGIVGRTLV SNKPSFSSDV  420
KTFDICEYPL VQHARKFGLN AAVASKLRST FTGDNDYILE FFLPVNMKGS SEQQLLLDSL  480
SSTMQRICRT LRTVSDEDTV SKGSFQTTFL DTSVMSSRSI FSNISSDKTN DMASSQGTLQ  540
PESKGARRSE KKKSSTEKNM SLNVLQQYFS GSLKDAAKSL GVCPTTLKRI CRQHGVMRWP  600
SRKINKVNRS LRKIQTVLDS VQGVDGGLKF DSVTGEFVAV GPLIQEFDTK KSPSTHHGEA  660
FVRSQGNMDE DASLELLKVK SHDCGEVKLE EDVETNQAGP AGSLMEPWAW ISKQSGLNYS  720
DDSDVGKRNE EVKKDNDLCV RRCLSSLALE DDGMMRGSEN VEPNQSIASS LSDSSNGSGA  780
VVVGGSSTSM EQDWNRTHNN SSENGLLLTV KATYKEDTIR FKVDPNVVGC SQLYKEVAKR  840
FKLQESAFQL KYLDDEEEWV MLVTDSDLHE CLEILNYMRK HTVKFLVRDL PGTAMGSSAG  900
SNGYLGTGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1546552RRSEKKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g03570
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2206740.0AK220674.1 Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL21-80-B11.
GenBankBT0104590.0BT010459.1 Arabidopsis thaliana RWP-RK domain containing protein (At3g59580) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023638784.10.0protein NLP9
SwissprotQ9M1B00.0NLP9_ARATH; Protein NLP9
TrEMBLR0FN830.0R0FN83_9BRAS; Uncharacterized protein
STRINGCagra.5954s0011.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22992768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.20.0Nin-like family protein