PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp5g03570

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

Nin-like

Protein Properties

Length: 909aa MW: 100524 Da PI: 5.4371

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g03570	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.3	7.1e-29	557	607	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk+Lgvc+T+LKriCRq+G++RWP+Rki+++ Tp5g03570 557 EKNMSLNVLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGVMRWPSRKINKV 607 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.052	541	627	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-26	559	607	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.93E-21	804	893	No hit	No description
PROSITE profile	PS51745	19.253	807	890	IPR000270	PB1 domain
SMART	SM00666	1.1E-23	807	890	IPR000270	PB1 domain
CDD	cd06407	1.88E-32	808	889	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.7E-23	808	887	No hit	No description
Pfam	PF00564	4.7E-18	809	889	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 909 aa Download sequence Send to blast
MENLSASREK GFCFPDVPTE EMDGLVKNLI SEENMFSSSS SSTSELMNFE SFASWCNTPF 60 ATDVLFTQYG LSTSQSTTTP TPFGTLHLDP SRSLHGLEGC YVGEKRPVQE MSSQFYCLSD 120 TQKMTGKRSK SSNLTGAIDC SVPRSLSHSL DEKMLKALSL FMEFSGEGLL AQFWAPVKTG 180 DQYMLSTCDQ AYLLDSRLSG YREASRKFTF SAEANQYSSP GLPGRVFLSG VPEWTSNVIY 240 YKTAEYLRMK HALDNNVRGS IAIPILEASG TSCCAVLELV TCREKLNFDL EMDSVCHVLQ 300 AVNLQTSTIP RRQYLSSNQK EALAEIRDVL RAVCHAHRLP LALAWIPCSY SKGANDELVK 360 VYGKSSDESS LLCIEETACY VNDMEMEGFV NACLEHYLRE GQGIVGRTLV SNKPSFSSDV 420 KTFDICEYPL VQHARKFGLN AAVASKLRST FTGDNDYILE FFLPVNMKGS SEQQLLLDSL 480 SSTMQRICRT LRTVSDEDTV SKGSFQTTFL DTSVMSSRSI FSNISSDKTN DMASSQGTLQ 540 PESKGARRSE KKKSSTEKNM SLNVLQQYFS GSLKDAAKSL GVCPTTLKRI CRQHGVMRWP 600 SRKINKVNRS LRKIQTVLDS VQGVDGGLKF DSVTGEFVAV GPLIQEFDTK KSPSTHHGEA 660 FVRSQGNMDE DASLELLKVK SHDCGEVKLE EDVETNQAGP AGSLMEPWAW ISKQSGLNYS 720 DDSDVGKRNE EVKKDNDLCV RRCLSSLALE DDGMMRGSEN VEPNQSIASS LSDSSNGSGA 780 VVVGGSSTSM EQDWNRTHNN SSENGLLLTV KATYKEDTIR FKVDPNVVGC SQLYKEVAKR 840 FKLQESAFQL KYLDDEEEWV MLVTDSDLHE CLEILNYMRK HTVKFLVRDL PGTAMGSSAG 900 SNGYLGTGS

Sequence ? help Back to Top

Protein Sequence Length: 909 aa Download sequence Send to blast

MENLSASREK GFCFPDVPTE EMDGLVKNLI SEENMFSSSS SSTSELMNFE SFASWCNTPF  60
ATDVLFTQYG LSTSQSTTTP TPFGTLHLDP SRSLHGLEGC YVGEKRPVQE MSSQFYCLSD  120
TQKMTGKRSK SSNLTGAIDC SVPRSLSHSL DEKMLKALSL FMEFSGEGLL AQFWAPVKTG  180
DQYMLSTCDQ AYLLDSRLSG YREASRKFTF SAEANQYSSP GLPGRVFLSG VPEWTSNVIY  240
YKTAEYLRMK HALDNNVRGS IAIPILEASG TSCCAVLELV TCREKLNFDL EMDSVCHVLQ  300
AVNLQTSTIP RRQYLSSNQK EALAEIRDVL RAVCHAHRLP LALAWIPCSY SKGANDELVK  360
VYGKSSDESS LLCIEETACY VNDMEMEGFV NACLEHYLRE GQGIVGRTLV SNKPSFSSDV  420
KTFDICEYPL VQHARKFGLN AAVASKLRST FTGDNDYILE FFLPVNMKGS SEQQLLLDSL  480
SSTMQRICRT LRTVSDEDTV SKGSFQTTFL DTSVMSSRSI FSNISSDKTN DMASSQGTLQ  540
PESKGARRSE KKKSSTEKNM SLNVLQQYFS GSLKDAAKSL GVCPTTLKRI CRQHGVMRWP  600
SRKINKVNRS LRKIQTVLDS VQGVDGGLKF DSVTGEFVAV GPLIQEFDTK KSPSTHHGEA  660
FVRSQGNMDE DASLELLKVK SHDCGEVKLE EDVETNQAGP AGSLMEPWAW ISKQSGLNYS  720
DDSDVGKRNE EVKKDNDLCV RRCLSSLALE DDGMMRGSEN VEPNQSIASS LSDSSNGSGA  780
VVVGGSSTSM EQDWNRTHNN SSENGLLLTV KATYKEDTIR FKVDPNVVGC SQLYKEVAKR  840
FKLQESAFQL KYLDDEEEWV MLVTDSDLHE CLEILNYMRK HTVKFLVRDL PGTAMGSSAG  900
SNGYLGTGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	546	552	RRSEKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g03570

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK220674	0.0	AK220674.1 Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL21-80-B11.
GenBank	BT010459	0.0	BT010459.1 Arabidopsis thaliana RWP-RK domain containing protein (At3g59580) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023638784.1	0.0	protein NLP9
Swissprot	Q9M1B0	0.0	NLP9_ARATH; Protein NLP9
TrEMBL	R0FN83	0.0	R0FN83_9BRAS; Uncharacterized protein
STRING	Cagra.5954s0011.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein