PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g02650
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 322aa    MW: 36538.7 Da    PI: 7.1961
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g02650genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.7e-05426123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ykC+ C ksF +   L  H+r+H
  Tp5g02650  4 YKCKVCFKSFVNGRALGGHMRSH 26
               9*********************9 PP
2zf-C2H215.93.7e-05207229123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y+C+ Cgk+F++   L  H  +H
  Tp5g02650 207 YTCETCGKVFKSYQALGGHRASH 229
                9************9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.3E-4326IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.82E-9326No hitNo description
PfamPF139121.1E-7428IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.263426IPR007087Zinc finger, C2H2
SMARTSM003550.015426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576673.82E-9202229No hitNo description
PROSITE profilePS5015711.24207234IPR007087Zinc finger, C2H2
PfamPF139124.9E-11207231IPR007087Zinc finger, C2H2
SMARTSM003550.011207229IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280209229IPR007087Zinc finger, C2H2
PfamPF139125.6E-12258280IPR007087Zinc finger, C2H2
PROSITE profilePS501579.058258280IPR007087Zinc finger, C2H2
SMARTSM003550.23258280IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280260280IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MESYKCKVCF KSFVNGRALG GHMRSHMPSL HKFSIEEDEQ ERPRQLSDET ESDVSSSASE  60
EGEEVKRNGL REKHLTMDDD PKKFAFTGSV LLEDDESETE SSRNITNLTR KRSKRTRKLD  120
SLATKKTKMS QLGYKTEPEP ESEPPHSSAS DTTTDEDLAF CLMMLSRDKW KKNNNSSKEV  180
VEELDTEESE GYNKSSKINR AITKGRYTCE TCGKVFKSYQ ALGGHRASHK KNRVSNKTEP  240
RSETEYDNVI VSAEKRIHEC PICLRVFASG QALGGHKRSH GVGNMSVNHH HQVHRTEPVK  300
QRMIDLNLPA PTEEDEVSVV FQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g02650
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402568.11e-176zinc finger protein ZAT9
SwissprotQ9M2021e-155ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLV4NDF71e-175V4NDF7_EUTSA; Uncharacterized protein
STRINGXP_006402568.11e-176(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-120C2H2-like zinc finger protein