PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g02230
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HD-ZIP
Protein Properties Length: 803aa    MW: 87964.5 Da    PI: 6.7285
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g02230genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.27.6e-20118173156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +++ +++t++q++ Le++F+++ +p++++r +L+++l+L+ rqVk+WFqNrR+++k
  Tp5g02230 118 KKRYHRHTPKQIQDLESVFKECAHPDEKQRLDLSRRLNLDPRQVKFWFQNRRTQMK 173
                688999***********************************************999 PP
2START189.22.1e-593185372206
                HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS
      START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 
                la++a++elvk+a+ +ep+Wv+ss    e++n++e+ ++f++  +     + +ea++++g v+ ++  lve+l+d+  +W  +++    + +t+evissg
  Tp5g02230 318 LALAAMDELVKMAQTREPLWVRSSdtgfEMLNKEEYDTSFSRCVGpkqdgFVSEASKETGTVIINSLALVETLMDSE-RWADMFPclisRTSTTEVISSG 416
                6899************************99999999999966444888889**************************.********************** PP

                ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
      START  89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                      gal+lm+aelq+lsplvp R + f+R+++q+ +g+w++vdvS+ds ++ + sss+ R   lpSg+l+++++ng+skvtw+eh++++++l+h l+
  Tp5g02230 417 mggtrnGALHLMQAELQLLSPLVPvRQVSFLRFCKQHAEGVWAVVDVSIDSIREGS-SSSCTR---LPSGCLVQDMANGYSKVTWMEHTEYDENLIHRLY 512
                *******************************************************9.899888...********************************** PP

                HHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 182 rslvksglaegaktwvatlqrqcek 206
                r+l++ gla+ga++w+a+lqrqce+
  Tp5g02230 513 RPLLSCGLAFGAQRWMAALQRQCEC 537
                ***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-21105175IPR009057Homeodomain-like
SuperFamilySSF466891.42E-19106175IPR009057Homeodomain-like
PROSITE profilePS5007117.265115175IPR001356Homeobox domain
SMARTSM003893.5E-18116179IPR001356Homeobox domain
PfamPF000461.8E-17118173IPR001356Homeobox domain
CDDcd000862.07E-17118175No hitNo description
PROSITE patternPS000270150173IPR017970Homeobox, conserved site
PROSITE profilePS5084840.849308540IPR002913START domain
SuperFamilySSF559617.55E-31311537No hitNo description
CDDcd088751.18E-108312536No hitNo description
SMARTSM002344.8E-49317537IPR002913START domain
PfamPF018522.4E-51318537IPR002913START domain
SuperFamilySSF559612.88E-17566795No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 803 aa     Download sequence    Send to blast
MNFNGFLGDG SSGERAAKQI SDVPYSDHFS FSTAATMLGS SIAPPHHTLI PHSRPFSSHG  60
LSLGLQTNGE IHRNGEIFES NLTRKSRGED AESRSESDNA EAVSGDDLET GDKPPRKKKR  120
YHRHTPKQIQ DLESVFKECA HPDEKQRLDL SRRLNLDPRQ VKFWFQNRRT QMKTQIERHE  180
NALLRQENDK LRAENMSVRE AMRNPMCANC GGPAVLGEIS MEEQHLRIEN SRLKDELDRV  240
CALTGKFLGR SIPSPTGSHH VPDSSLVLGV GVGSGGGFTL SSPRFEVSNG TGSCLATVNR  300
QAPVSVSDFD QRSRYLDLAL AAMDELVKMA QTREPLWVRS SDTGFEMLNK EEYDTSFSRC  360
VGPKQDGFVS EASKETGTVI INSLALVETL MDSERWADMF PCLISRTSTT EVISSGMGGT  420
RNGALHLMQA ELQLLSPLVP VRQVSFLRFC KQHAEGVWAV VDVSIDSIRE GSSSSCTRLP  480
SGCLVQDMAN GYSKVTWMEH TEYDENLIHR LYRPLLSCGL AFGAQRWMAA LQRQCECLTI  540
LMSSTVSPSR SPTHISCNGR KSMLKLAKRM TDNFCGGVCA SSLQKWSRLN VGNVDEDVRI  600
MTRKSVNDPG EPPGIILNAA TSVWMPVSPR RLFDFLGNER LRSEWDILSN GGPMQEMAHI  660
AKGHDHSNSV SLLRATAINA NQSGMLILQE TSIDAAGAVV VYAPVDIPAM QAVMNGGDSA  720
YVALLPSGFA ILPQRCAAEE RNGNGNGNGG CMEEGGSLLT VAFQILVNSL PTAKLTVESV  780
ETVNNLISCT VQKIKTALHC DSS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00418DAPTransfer from AT3G61150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g02230
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1824900.0DQ182490.1 Brassica napus baby boom interacting protein 2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402516.10.0homeobox-leucine zipper protein HDG1
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLV4LJP30.0V4LJP3_EUTSA; Uncharacterized protein
STRINGXP_006402516.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]