PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g01780
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 305aa    MW: 34366.1 Da    PI: 4.7632
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g01780genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.6e-18103153256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                +y+GVr+++ +g+++AeIrdps+   r r++lg+f taeeAa  +++a+  l+g+
  Tp5g01780 103 KYRGVRQRP-WGKFAAEIRDPST---RSRIWLGTFVTAEEAAMVYDRAAIHLRGH 153
                8********.**********976...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-29102159IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-20103160IPR016177DNA-binding domain
PROSITE profilePS5103221.535103160IPR001471AP2/ERF domain
CDDcd000181.74E-30103159No hitNo description
SMARTSM003806.4E-36103166IPR001471AP2/ERF domain
PfamPF008475.6E-11103153IPR001471AP2/ERF domain
PRINTSPR003675.4E-10104115IPR001471AP2/ERF domain
PRINTSPR003675.4E-10126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MERRTRRVKF TEHRTVTPVP AKPSNGSPRV VRITFTDPFA TDSSSDDDNN VTVAPRVKRY  60
VEEIRFGESE PSSSAVAARK ARCKSEKGRG ERRNDDVSAN PRKYRGVRQR PWGKFAAEIR  120
DPSTRSRIWL GTFVTAEEAA MVYDRAAIHL RGHNAQTNFL TPPPSPGKTP VIDLETVSGC  180
DSGKDSRQSL RSPTSVLRFN VNDETELESE PIELSPEIKS TIAEGSHESL FPDPYSLPDL  240
CLAGDYFWDS EIPPDPLFLD EIETQKPFPN TAVPKEENEP EDFSFGLIED FDAFPWDVDN  300
FFKPD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2199159162ATERF1
3gcc_A6e-2199159162ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g01780
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402462.21e-153ethylene-responsive transcription factor CRF6
SwissprotQ9M3741e-130CRF6_ARATH; Ethylene-responsive transcription factor CRF6
TrEMBLA0A1J3CYF21e-168A0A1J3CYF2_NOCCA; Ethylene-responsive transcription factor CRF6
STRINGXP_006402462.11e-157(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.11e-125cytokinin response factor 6