PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp5g01540 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ARF | ||||||||
Protein Properties | Length: 592aa MW: 66406.4 Da PI: 6.4034 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.6 | 1.1e-23 | 127 | 227 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++ +k+a+e+ + + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv+a++L +gD +vF + +++ l+ Tp5g01540 127 FVKILTASDTSTHGGFSVLRKHATEClpaldmtQ--ATPTQELVTRDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVSAKRLVAGDAFVFL--RGENGDLR 222 89****************************9543..445569************************************************..3488889* PP EEEE- CS B3 94 vkvfr 98 v+v+r Tp5g01540 223 VGVRR 227 **998 PP | |||||||
2 | Auxin_resp | 93.1 | 4.7e-31 | 253 | 332 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+ t++ F v+Y+Pr s+F+v v+k+++a+k+ +s+G+Rf+m+fe+e+s+er ++Gt+vg+ dl++ +Wp SkWrsL+ Tp5g01540 253 ASHAVLTNTLFVVIYKPRI--SQFIVGVNKYMEAIKHGFSLGTRFRMRFEGEESPERIFTGTIVGTGDLSS-QWPASKWRSLQ 332 68999*************8..9**********************************************777.*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.92E-40 | 112 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.8E-38 | 121 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.59E-20 | 125 | 227 | No hit | No description |
PROSITE profile | PS50863 | 12.139 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-21 | 127 | 227 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.7E-21 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.1E-28 | 253 | 332 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.8E-13 | 479 | 572 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.11E-12 | 484 | 563 | No hit | No description |
PROSITE profile | PS51745 | 26.365 | 487 | 579 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 592 aa Download sequence Send to blast |
MANVDGDDFR TSLSRSYHDQ LYTELWKACA GPLVEVPLAE ERVFYFPQGH MEQLVASTNQ 60 GIESEEIPVF NLPPKILCRV LSVMLKAEHE TDEVYAQITL RPEEDQSEPT SLDPPIVEPT 120 KQMFHSFVKI LTASDTSTHG GFSVLRKHAT ECLPALDMTQ ATPTQELVTR DLHGFEWRFK 180 HIFRGQPRRH LLTTGWSTFV SAKRLVAGDA FVFLRGENGD LRVGVRRLAR HQSTMPTSVI 240 STQSMHLGVL ATASHAVLTN TLFVVIYKPR ISQFIVGVNK YMEAIKHGFS LGTRFRMRFE 300 GEESPERIFT GTIVGTGDLS SQWPASKWRS LQVQWDEPTT LQRPDKVSPW EIEPFLPTSP 360 VSTPAQQSQP KCKRSRPIES SVLTPAPASF LHGFPQSQDP ANASLKVFQD PSTERNLGGF 420 ATNNSFKAET PPPASCCYRL FGFDLTSNSP APVPPDNQPI DTSGSPKCQE PITPSAANEP 480 KKQQTSRTRT KVQMQGIAVG RAVDLTLLKS YDELIKELEE MFDIQGQLLS RDKWIVVFTD 540 DEGDMMLAGD DPWNEFCKMA KKIFIYSSDE VKKMTTKLKS SSSLQNEESM NW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-161 | 19 | 355 | 17 | 355 | Auxin response factor 1 |
4ldw_A | 1e-161 | 19 | 355 | 17 | 355 | Auxin response factor 1 |
4ldw_B | 1e-161 | 19 | 355 | 17 | 355 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp5g01540 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF334717 | 0.0 | AF334717.1 Arabidopsis thaliana auxin response factor ARF18 (At3g61830) mRNA, complete cds. | |||
GenBank | AY059746 | 0.0 | AY059746.1 Arabidopsis thaliana auxin response factor ARF18 (At3g61830) mRNA, complete cds. | |||
GenBank | AY070463 | 0.0 | AY070463.1 Arabidopsis thaliana AT3g61830/F15G16_220 mRNA, complete cds. | |||
GenBank | AY091392 | 0.0 | AY091392.1 Arabidopsis thaliana putative auxin response factor protein (At3g61830) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006402437.1 | 0.0 | auxin response factor 18 | ||||
Swissprot | Q9C5W9 | 0.0 | ARFR_ARATH; Auxin response factor 18 | ||||
TrEMBL | V4L0T8 | 0.0 | V4L0T8_EUTSA; Auxin response factor | ||||
STRING | XP_006402437.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7435 | 18 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61830.1 | 0.0 | auxin response factor 18 |
Publications ? help Back to Top | |||
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