PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g01520
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Dof
Protein Properties Length: 331aa    MW: 36487.4 Da    PI: 9.5063
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g01520genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1239.8e-3976136262
     zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                ++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+ss
  Tp5g01520  76 PQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSS 136
                6899******************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-3075134IPR003851Zinc finger, Dof-type
PfamPF027017.8E-3378134IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.70580134IPR003851Zinc finger, Dof-type
PROSITE patternPS01361082118IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009639Biological Processresponse to red or far red light
GO:0009845Biological Processseed germination
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDATKWTQGF QEMINAKPME QMISNTNNNT SQQQQQQQQT FIATTIRPNP TASNGGSGAG  60
NDNTTATTME SRKARPQEKV NCPRCNSTNT KFCYYNNYSL TQPRYFCKGC RRYWTEGGSL  120
RNVPVGGSSR KNKRSSTPLA SPSNPKLPDL NPPILFSNQI PNKSSKDLNL LSFPVMQDHH  180
HGMSQFLHMP KIENNNTPSS IYASSSPVSA LELLRSNGVA SRGMNTFLPG QMIDSNSVIY  240
SSLGFPTMAD YKQSNNNLSF SIDHHQGIGH NTISSNPRAE DNNHADDMNG ASRVLFPFSD  300
MKELSSATQG KSHGSNTYWS GMFSNTGGSS W
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g01520
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794810.0JN979481.1 Brassica rapa subsp. pekinensis auxin response factor 18-1 (ARF18-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013604929.10.0PREDICTED: dof zinc finger protein DOF3.7 isoform X1
SwissprotQ433850.0DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBLA0A0D3DUY20.0A0A0D3DUY2_BRAOL; Uncharacterized protein
STRINGBo8g097330.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25282673
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.40.0Dof family protein