PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp5g01400

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bHLH

Protein Properties

Length: 368aa MW: 42255.5 Da PI: 6.7087

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g01400	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.6	4.6e-13	180	228	1	52
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 +r +h ++Er+RR+++N+ ++ Lr+llP++ + ++ + a+i+ A++Y k Tp5g01400 180 QRINHIAVERNRRRQMNEHINSLRSLLPPS---YIQRGDQASIVGGAINYAK 228 699*************************...9**************66 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.76E-16	178	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.79E-10	178	235	No hit	No description
PROSITE profile	PS50888	15.224	179	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.4E-10	180	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-12	181	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-9	185	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MERFQGHINP CFLEGKGDAR SLEVQGFAKA QNFAFKEEEE EEESLQDTVP FQQMLQSEED 60 PSLFLSIKEP NFLRLLSLQK LKKPWEPESY LPHKDPQFQS PDQSDTNRFY QNPISASSME 120 AGNQALSSQE LPFSRGDMTL TSSSRRKRKI SDLLAPEMAR EKRKRRRTKP TKNIEDIENQ 180 RINHIAVERN RRRQMNEHIN SLRSLLPPSY IQRGDQASIV GGAINYAKVL EQIIQSLEFQ 240 KRTQQHSGVE NEVNEQATNN HHHLSSSDLW TTHEEQTCIP RIEATVIQNH VNLKVECPKK 300 QGQLLRGIIS LEKLRLSVLH LNISSSSHSS VSYSFNLKME DGCELESADE ITKAAHQIFD 360 MPTNLINI

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MERFQGHINP CFLEGKGDAR SLEVQGFAKA QNFAFKEEEE EEESLQDTVP FQQMLQSEED  60
PSLFLSIKEP NFLRLLSLQK LKKPWEPESY LPHKDPQFQS PDQSDTNRFY QNPISASSME  120
AGNQALSSQE LPFSRGDMTL TSSSRRKRKI SDLLAPEMAR EKRKRRRTKP TKNIEDIENQ  180
RINHIAVERN RRRQMNEHIN SLRSLLPPSY IQRGDQASIV GGAINYAKVL EQIIQSLEFQ  240
KRTQQHSGVE NEVNEQATNN HHHLSSSDLW TTHEEQTCIP RIEATVIQNH VNLKVECPKK  300
QGQLLRGIIS LEKLRLSVLH LNISSSSHSS VSYSFNLKME DGCELESADE ITKAAHQIFD  360
MPTNLINI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	166	KRKISDLLAPEMAREKRKRRR
2	161	166	KRKRRR
3	162	166	RKRRR
4	162	167	RKRRRT
5	162	169	RKRRRTKP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g01400

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006402426.1	0.0	transcription factor bHLH67
Swissprot	Q700E4	1e-172	BH067_ARATH; Transcription factor bHLH67
TrEMBL	V4LJF4	0.0	V4LJF4_EUTSA; Uncharacterized protein
STRING	XP_006402426.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3119	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61950.1	1e-154	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development. J. Exp. Bot., 2015. 66(5): p. 1543-52 [PMID:25582452]