PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g01380
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 304aa    MW: 34370.4 Da    PI: 7.0814
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g01380genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3105.13.5e-3321126199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+kv tpsdv+k++rlv+pk++ae++        ++++++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++d+ ++ +l+
  Tp5g01380  21 FDKVVTPSDVGKLNRLVIPKQHAERYfpldnssTSENNKGLLLNFEDRTGNSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRDSGNKDKLF 120
                89****************************999444557889************************************************99888999** PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                + ++r+
  Tp5g01380 121 IDWRRR 126
                ***998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-4311134IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-3218129IPR015300DNA-binding pseudobarrel domain
CDDcd100179.05E-2619115No hitNo description
PfamPF023621.3E-3021126IPR003340B3 DNA binding domain
SMARTSM010196.3E-2521127IPR003340B3 DNA binding domain
PROSITE profilePS5086314.50821127IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MNLEEERPVE EASSMEREHM FDKVVTPSDV GKLNRLVIPK QHAERYFPLD NSSTSENNKG  60
LLLNFEDRTG NSWRFRYSYW NSSQSYVMTK GWSRFVKDKK LDAGDIVSFQ RDSGNKDKLF  120
IDWRRRPKIP DHQTAHQFAG AMFPRFYSFP HPQMPASYES HNLYHRFQRD LGIGYYVRSM  180
ERHDPTAVIE SVPVILQRRA QVAAMASSRG EKRLRLFGVD MECGRGGEGG GGSVNSTEEE  240
SSSSGGSIPR GGVSMAGVGS LLQLRLVSCD DDESLVAMEA ASVDEDHHVF TKKGKSSLSF  300
DLDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-65161293116B3 domain-containing transcription factor NGA1
5os9_B3e-65161293116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g01380
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1176460.0AK117646.1 Arabidopsis thaliana At3g61970 mRNA for putative RAV, complete cds, clone: RAFL17-30-L10.
GenBankAL1386420.0AL138642.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F21F14.
GenBankBT0258660.0BT025866.1 Arabidopsis thaliana At3g61970 mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013746312.10.0B3 domain-containing transcription factor NGA2
SwissprotQ9M2681e-179NGA2_ARATH; B3 domain-containing transcription factor NGA2
TrEMBLA0A078J0P60.0A0A078J0P6_BRANA; BnaA04g27480D protein
TrEMBLA0A3P6BW440.0A0A3P6BW44_BRACM; Uncharacterized protein
STRINGBra014415.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.11e-167B3 family protein
Publications ? help Back to Top
  1. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]