PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g00840
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ARR-B
Protein Properties Length: 419aa    MW: 48082.8 Da    PI: 5.7066
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g00840genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.82.9e-24210268155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel....mkvkgLtlehvkSHLQkYRl 55 
                kpr+ Wt eLHe+F +ave++G s+kA+Pk il++    m+v+gLt+++v+SHLQkYRl
  Tp5g00840 210 KPRMIWTAELHEKFEKAVEKIGSSDKAVPKLILKCmqeeMNVQGLTRNKVASHLQKYRL 268
                79******************************9872333589****************8 PP
2Response_reg63.69.9e-22411471107
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vd +p+ ++l+++++++  y +v+ +++g++a++ l +++  +Dl++ D   p+++G+e+l +i +e  +lp+++++   +++ + +  k+Ga 
     Tp5g00840  41 VLLVDSDPKSLHLMNNLMTQFSY-QVTIFQKGDAAMAFLMTSKheIDLVIWDFHVPEINGIEALNTIGKEM-DLPVVIMSHDHNKKAVMNSTKYGAC 135
                   89*********************.*************99555556**********************6644.7*******99999************ PP

                   EEEESS--HHHH CS
  Response_reg  96 dflsKpfdpeel 107
                   dfl+Kp+++e +
     Tp5g00840 136 DFLVKPVSKEVI 147
                   ******998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23007.9E-2938178No hitNo description
SuperFamilySSF521728.11E-2638166IPR011006CheY-like superfamily
SMARTSM004484.0E-1539150IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011033.3440155IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.6E-1841147IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.02E-1542154No hitNo description
SuperFamilySSF466893.05E-15208272IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-24209272IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-20210269IPR006447Myb domain, plants
PfamPF002494.4E-8213267IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MSISQKTLKE SSRDLLREEE PCDDEIESPI DEEFPTTRIR VLLVDSDPKS LHLMNNLMTQ  60
FSYQVTIFQK GDAAMAFLMT SKHEIDLVIW DFHVPEINGI EALNTIGKEM DLPVVIMSHD  120
HNKKAVMNST KYGACDFLVK PVSKEVIAVL WRHVYRKRRS KSGLHSVESD REEEGQENID  180
LYPSNEEGSK NIEDSGEQNT CDQRGDKYKK PRMIWTAELH EKFEKAVEKI GSSDKAVPKL  240
ILKCMQEEMN VQGLTRNKVA SHLQKYRLNA EKKTYVPQET REDSGLSNDG PNTALTASKP  300
LLYSSLNLQT RVPYFANDQA TSNAPMQYPS TNYPTMNNTH FMTNPLANLP YFDSFHQPQQ  360
HQHQQYYHCS LQLPSVTTKQ ESANVSAATE DLISNTNSHY DYSDYFPPEL SNFDQIHRY
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g00840
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603444.10.0PREDICTED: putative two-component response regulator ARR20
SwissprotQ9LZJ81e-130ARR20_ARATH; Putative two-component response regulator ARR20
TrEMBLA0A3P6GH570.0A0A3P6GH57_BRAOL; Uncharacterized protein
STRINGBra041027.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137711825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62670.11e-109response regulator 20