PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g29800
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family CO-like
Protein Properties Length: 325aa    MW: 36747 Da    PI: 6.3997
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g29800genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.15.5e-061243334
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH 34
               +r C+ +++  +  +C+ ++  lC  C  + H
  Tp4g29800 12 PRLCDYCDSSVALVYCKADSAKLCLACDKQVH 43
               578**************************999 PP
2zf-B_box22.82e-075697441
   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvp 41
                 C+ +++ + + fC + ++ lC++C  ++H      H+++p
  Tp4g29800 56 LLCDSCDDSPSSVFCDTERSVLCQNCDWQHHTAssslHSRRP 97
               57***************************7744888888877 PP
3CCT58.62.3e-20281324144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                R+ al+RYk K+k+R++eK+irYesRK++AesR R++GrF+k++
  Tp4g29800 281 RNSALSRYKAKKKSRRYEKHIRYESRKVRAESRTRIRGRFAKAD 324
                899**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.4E-131057IPR000315B-box-type zinc finger
PROSITE profilePS501199.8551057IPR000315B-box-type zinc finger
CDDcd000217.37E-61357No hitNo description
PROSITE profilePS5011910.215398IPR000315B-box-type zinc finger
PfamPF006434.0E-55697IPR000315B-box-type zinc finger
CDDcd000212.66E-75798No hitNo description
SMARTSM003360.295898IPR000315B-box-type zinc finger
PfamPF062031.6E-14281323IPR010402CCT domain
PROSITE profilePS5101714.326281323IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEEDEASHHE HPRLCDYCDS SVALVYCKAD SAKLCLACDK QVHVTNQLFS KHFRSLLCDS  60
CDDSPSSVFC DTERSVLCQN CDWQHHTASS SLHSRRPLEG FSGSPSASEF LSILGLHDLS  120
DKPPLSGSDH LLLSESPEIL SLNDLIASAG SAHNFRPMDV PPLPKDRHAT CGRHKEEMIR  180
QLRELSRSEP NCLKYETLDA ELDAGFQFPA PGNDDDLFST FDQVSGLKWF EDEDFPYCSP  240
RNDLSESDNV KHRGCPQQEL SVMVPVCTGT RSTHEINSLE RNSALSRYKA KKKSRRYEKH  300
IRYESRKVRA ESRTRIRGRF AKADP
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g29800
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935981e-103AB493598.1 Arabidopsis thaliana At2g47890 mRNA for hypothetical protein, partial cds, clone: RAAt2g47890.
GenBankAC0053091e-103AC005309.3 Arabidopsis thaliana chromosome 2 clone F17A22 map CIC06C03, complete sequence.
GenBankAC0060721e-103AC006072.4 Arabidopsis thaliana chromosome 2 clone T9J23 map CIC06C03, complete sequence.
GenBankBT0234131e-103BT023413.1 Arabidopsis thaliana At2g47890 gene, complete cds.
GenBankCP0026851e-103CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142494.11e-166PREDICTED: zinc finger protein CONSTANS-LIKE 13
SwissprotO822561e-162COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBLM4CJN91e-164M4CJN9_BRARP; Uncharacterized protein
STRINGBra004423.1-P1e-165(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81482736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-132B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]