PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g29780
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 469aa    MW: 50177.7 Da    PI: 8.7028
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g29780genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.57.1e-114872327
               S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                + C +++rtG C yG+rC+++H++
  Tp4g29780 48 APDCAYYMRTGVCGYGNRCRYNHPR 72
               589********************96 PP
2zf-CCCH40.54.7e-1393117327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C+f+++tGtCk+G++CkF+H++
  Tp4g29780  93 EPPCQFYLKTGTCKFGASCKFHHPK 117
                79*********************96 PP
3zf-CCCH36.48.6e-12138163227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++++C+++++tG+Ck+G +CkF+H++
  Tp4g29780 138 GEKECSYYLKTGQCKFGITCKFHHPQ 163
                5789********************97 PP
4zf-CCCH37.83.2e-12290316127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C+++++tG Ck+G +CkF+H++
  Tp4g29780 290 PGEPECQYYLKTGDCKFGTSCKFHHPR 316
                5799*********************96 PP
5zf-CCCH31.72.7e-10338362327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                   C f+ ++G+Ck+G++CkF H++
  Tp4g29780 338 VQQCTFYVQNGFCKFGSTCKFDHPM 362
                567********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.8824573IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-54572IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-84872IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-65074IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-55172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.90190118IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-790117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-693118IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-1093117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-595116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474136164IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5136163IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-9138163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6139164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4142162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356289317IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5289316IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9291316IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6294318IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5295317IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.061335363IPR000571Zinc finger, CCCH-type
SMARTSM003568.2E-5335362IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-8337362IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6337366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4341361IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MYGRNPPMNG SQSAQGPEWT PGDADTGLEE SMWRLGLASE TYPERPGAPD CAYYMRTGVC  60
GYGNRCRYNH PRDRATVEAT VRATGQYPER IGEPPCQFYL KTGTCKFGAS CKFHHPKNAG  120
GSMSNVPLNI YGYPVREGEK ECSYYLKTGQ CKFGITCKFH HPQPAGATVP PTTASAPQFY  180
PSVQSLMPDQ FGGPSSSLRV ARTLLPGSYM QGAYGPMLLT PGVVPIPGWS PYSAPVSPAL  240
SPGAQHAVGA TSLYGVTQLS STTPSLPGVY PSLSSPTGVI QKEQSFPERP GEPECQYYLK  300
TGDCKFGTSC KFHHPRDRVP PRANCVLSPI GLPLRPGVQQ CTFYVQNGFC KFGSTCKFDH  360
PMGTIRYNPS ASSLADAPVA PYPVSSLLGA LAVAAPSSSS TELISGAAKD PYLSCLPTSR  420
STSNISAGLI FSQSGGSIPF SDLQLSSQTS LPLTGSRITR QGREIRRSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g29780
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0303910.0BT030391.1 Arabidopsis thaliana At2g47850 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294141.10.0zinc finger CCCH domain-containing protein 32 isoform X1
RefseqXP_023639387.10.0zinc finger CCCH domain-containing protein 32 isoform X1
RefseqXP_023639388.10.0zinc finger CCCH domain-containing protein 32 isoform X1
RefseqXP_023639389.10.0zinc finger CCCH domain-containing protein 32 isoform X1
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLR0HC920.0R0HC92_9BRAS; Uncharacterized protein
STRINGBostr.13208s0032.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein