PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g29730
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NF-YB
Protein Properties Length: 161aa    MW: 18409.7 Da    PI: 6.8792
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g29730genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB170.12.5e-5346141297
      NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisf+t+easdkc++ekrk +ngdd++wa+a+lGf+dy+e+lk+yl++yr +ege+
  Tp4g29730  46 KEQDRLLPIANVGRIMKNILPPNAKISKEAKETMQECVSEFISFITGEASDKCHKEKRKNVNGDDICWAMANLGFDDYAEQLKKYLMRYRVIEGER 141
                89*******************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.4E-5238155IPR009072Histone-fold
SuperFamilySSF471131.43E-3848156IPR009072Histone-fold
PfamPF008082.0E-2651115IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.5E-187997No hitNo description
PROSITE patternPS0068508298IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.5E-1898116No hitNo description
PRINTSPR006152.5E-18117135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MAGNYPSFQN PIPRFQNYNF GSSSSQHQHH GLVVEDQQQE ENMMIKEQDR LLPIANVGRI  60
MKNILPPNAK ISKEAKETMQ ECVSEFISFI TGEASDKCHK EKRKNVNGDD ICWAMANLGF  120
DDYAEQLKKY LMRYRVIEGE RANHHGKGGT KASPDNQHID Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B9e-4445135191Transcription factor HapC (Eurofung)
4g92_B9e-4445135191Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g29730
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7876651e-157KC787665.1 Brassica napus transcription factor subunit NF-YB5 (NF-YB5) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474925.11e-104PREDICTED: nuclear transcription factor Y subunit B-5
SwissprotO822481e-101NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A1J3F4991e-104A0A1J3F499_NOCCA; Nuclear transcription factor Y subunit B-5
STRINGBo3g039790.11e-101(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.14e-97nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]