PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g28720

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

HD-ZIP

Protein Properties

Length: 246aa MW: 28960.1 Da PI: 4.9419

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g28720	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.1	7.5e-19	32	85	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++f++eq++ Le +Fe++ + +++ +LA++lgL+ rqV +WFqN+Ra++k Tp4g28720 32 NQRRFSDEQIKSLEMMFESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWK 85 6689*************************************************9 PP
2	HD-ZIP_I/II	120.1	1.2e-38	32	123	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ++rr+s+eq+k+LE++Fe+e++Lep++Kv+lareLglqprqva+WFqn+RAR+k+kqlE++++ L+++++ l+++ e+L+ke+++L +el++ Tp4g28720 32 NQRRFSDEQIKSLEMMFESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQLESEFNILRQNHNDLASQFESLKKEKQTLVSELHR 123 68*************************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.72E-18	14	89	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.67	27	87	IPR001356	Homeobox domain
SMART	SM00389	3.3E-16	30	91	IPR001356	Homeobox domain
CDD	cd00086	1.90E-14	30	88	No hit	No description
Pfam	PF00046	3.3E-16	32	85	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.5E-18	33	93	IPR009057	Homeodomain-like
PRINTS	PR00031	7.3E-6	58	67	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	62	85	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.3E-6	67	83	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.3E-13	87	129	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MTEGWEYSPA MMSADPFMTM KKMKKSSHNK NNQRRFSDEQ IKSLEMMFES ETRLEPRKKV 60 QLARELGLQP RQVAIWFQNK RARWKSKQLE SEFNILRQNH NDLASQFESL KKEKQTLVSE 120 LHRLNEAMQK KQEEGRLCCG DQAVVALSST DHESDNKENT RREPEEVRPE MEVYEKSGHD 180 DDDDGYHTNI KREYFGGFEE EADHLMNIVE PADSCLTSSD DWGGFKSDTN LLDQSSSNYP 240 WWDFWS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269\|PubMed:15604708, ECO:0000269\|PubMed:8771791}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00320	DAP	Transfer from AT2G46680	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g28720

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:8771791}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352871	0.0	AK352871.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-14-L20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_182191.1	1e-148	homeobox 7
Swissprot	P46897	1e-149	ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBL	A0A3P6CDA9	1e-147	A0A3P6CDA9_BRACM; Uncharacterized protein
STRING	AT2G46680.1	1e-147	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2498	28	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	1e-129	homeobox 7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou SF, et al. Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis. New Phytol., 2015. 208(1): p. 188-97 [PMID:25919792]