PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g27810
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HD-ZIP
Protein Properties Length: 779aa    MW: 85634.2 Da    PI: 6.9132
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g27810genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.95.6e-2195150156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +++ +++t++q++eLe++F+++++p++++r +L+++l+L+ rqVk+WFqNrR+++k
  Tp4g27810  95 KKRYHRHTPQQIQELESVFKECPHPDEKQRLDLSRRLNLDSRQVKFWFQNRRTQMK 150
                688999***********************************************999 PP

2START177.86.5e-563015281206
                HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
      START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                ela++a++elvk+a+ +ep+W + s    e++n++e+ ++f+           + +ea++++g+v+ ++  lve+l+d+  +W e+++    + +t+e i
  Tp4g27810 301 ELALSAMDELVKMAQTSEPLWITGSkgkrEMLNREEYDKNFTH--ClgprpdgFVTEASKEVGMVIINSLALVETLMDSE-RWAEMFPcmiaRNSTTEII 397
                57899********************999999999999999955..356999999**************************.******************* PP

                CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
      START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                ssg       al+lm+aelq+lsplvp R+++f+R+++q+ +g+w++vdvSvd  +++      +s+  +++lpSg+l+++++ng+skvtw++h+++++ 
  Tp4g27810 398 SSGmggtrnCALHLMQAELQLLSPLVPvRKVTFLRFCKQHAEGVWAVVDVSVDRISDRGGsasAQSSLSCRRLPSGCLVQDMPNGYSKVTWIDHTEYEET 497
                *****************************************************988887666888999******************************** PP

                XXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 176 lphwllrslvksglaegaktwvatlqrqcek 206
                 +h l+r+lv+sgla+g k+w + lqrqce+
  Tp4g27810 498 NIHHLYRPLVSSGLAFGSKRWISSLQRQCES 528
                *****************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.07E-2080152IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-2190160IPR009057Homeodomain-like
PROSITE profilePS5007117.63792152IPR001356Homeobox domain
SMARTSM003893.2E-1993156IPR001356Homeobox domain
CDDcd000867.97E-1995152No hitNo description
PfamPF000461.3E-1895150IPR001356Homeobox domain
PROSITE patternPS000270127150IPR017970Homeobox, conserved site
PROSITE profilePS5084842.393292531IPR002913START domain
SuperFamilySSF559612.2E-28295528No hitNo description
CDDcd088753.10E-113296527No hitNo description
PfamPF018522.0E-48301528IPR002913START domain
SMARTSM002349.6E-42301528IPR002913START domain
SuperFamilySSF559611.65E-20557771No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    Send to blast
MNFSGFLHHD DDKSAGGENH YSSAAAAMSG GGLVKSIFSS PRLSLGLGGE VVKTGESFEV  60
SVTRKSPESR SGSDNAEALS GDDDFNASDR PLKKKKRYHR HTPQQIQELE SVFKECPHPD  120
EKQRLDLSRR LNLDSRQVKF WFQNRRTQMK TQIERHENSL LRQENDNLRA ENMSVREAMR  180
NPMCGHCGGS AVLGEISLEE HHLRIENSRL KDELERICAL AGKFINRSND AGSHQLPNST  240
LKLGVGSKNV YDVGTGGDGF TLVPPGFEIS SSPFFSGLSA SVNRAGTDVV TGVDQKSLYL  300
ELALSAMDEL VKMAQTSEPL WITGSKGKRE MLNREEYDKN FTHCLGPRPD GFVTEASKEV  360
GMVIINSLAL VETLMDSERW AEMFPCMIAR NSTTEIISSG MGGTRNCALH LMQAELQLLS  420
PLVPVRKVTF LRFCKQHAEG VWAVVDVSVD RISDRGGSAS AQSSLSCRRL PSGCLVQDMP  480
NGYSKVTWID HTEYEETNIH HLYRPLVSSG LAFGSKRWIS SLQRQCESLT ILMSSTIPNR  540
NKPTPISSIG KKSMLKLAQR MTENFCRGVC ASSSQKWSKL DVGNIDEDVR IMTRKNVDGS  600
GEPPGILLSA ATSVWLPVSP RRLFDFLRDE LLRSEWDILS NGGPMQEIAN IFKGQDHSNS  660
VSLLRSTAMN ANQSSMLILQ ETSIDASGAI VVYAPVDIPA MHSVMNGADS AYVALLPSGF  720
AILPDGQAME ETGSLLTVAF QILVNSLPTA KLNVESIETV NNLISCTVQK IRAALRCDK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g27810
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637557.10.0PREDICTED: homeobox-leucine zipper protein HDG1-like isoform X2
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLA0A3P6BG640.0A0A3P6BG64_BRAOL; Uncharacterized protein
STRINGBostr.25993s0196.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]