PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp4g27810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 779aa MW: 85634.2 Da PI: 6.9132 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.9 | 5.6e-21 | 95 | 150 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r +L+++l+L+ rqVk+WFqNrR+++k Tp4g27810 95 KKRYHRHTPQQIQELESVFKECPHPDEKQRLDLSRRLNLDSRQVKFWFQNRRTQMK 150 688999***********************************************999 PP | |||||||
2 | START | 177.8 | 6.5e-56 | 301 | 528 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 ela++a++elvk+a+ +ep+W + s e++n++e+ ++f+ + +ea++++g+v+ ++ lve+l+d+ +W e+++ + +t+e i Tp4g27810 301 ELALSAMDELVKMAQTSEPLWITGSkgkrEMLNREEYDKNFTH--ClgprpdgFVTEASKEVGMVIINSLALVETLMDSE-RWAEMFPcmiaRNSTTEII 397 57899********************999999999999999955..356999999**************************.******************* PP CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS START 86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175 ssg al+lm+aelq+lsplvp R+++f+R+++q+ +g+w++vdvSvd +++ +s+ +++lpSg+l+++++ng+skvtw++h+++++ Tp4g27810 398 SSGmggtrnCALHLMQAELQLLSPLVPvRKVTFLRFCKQHAEGVWAVVDVSVDRISDRGGsasAQSSLSCRRLPSGCLVQDMPNGYSKVTWIDHTEYEET 497 *****************************************************988887666888999******************************** PP XXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 176 lphwllrslvksglaegaktwvatlqrqcek 206 +h l+r+lv+sgla+g k+w + lqrqce+ Tp4g27810 498 NIHHLYRPLVSSGLAFGSKRWISSLQRQCES 528 *****************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.07E-20 | 80 | 152 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.3E-21 | 90 | 160 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.637 | 92 | 152 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.2E-19 | 93 | 156 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.97E-19 | 95 | 152 | No hit | No description |
Pfam | PF00046 | 1.3E-18 | 95 | 150 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 127 | 150 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 42.393 | 292 | 531 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.2E-28 | 295 | 528 | No hit | No description |
CDD | cd08875 | 3.10E-113 | 296 | 527 | No hit | No description |
Pfam | PF01852 | 2.0E-48 | 301 | 528 | IPR002913 | START domain |
SMART | SM00234 | 9.6E-42 | 301 | 528 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.65E-20 | 557 | 771 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 779 aa Download sequence Send to blast |
MNFSGFLHHD DDKSAGGENH YSSAAAAMSG GGLVKSIFSS PRLSLGLGGE VVKTGESFEV 60 SVTRKSPESR SGSDNAEALS GDDDFNASDR PLKKKKRYHR HTPQQIQELE SVFKECPHPD 120 EKQRLDLSRR LNLDSRQVKF WFQNRRTQMK TQIERHENSL LRQENDNLRA ENMSVREAMR 180 NPMCGHCGGS AVLGEISLEE HHLRIENSRL KDELERICAL AGKFINRSND AGSHQLPNST 240 LKLGVGSKNV YDVGTGGDGF TLVPPGFEIS SSPFFSGLSA SVNRAGTDVV TGVDQKSLYL 300 ELALSAMDEL VKMAQTSEPL WITGSKGKRE MLNREEYDKN FTHCLGPRPD GFVTEASKEV 360 GMVIINSLAL VETLMDSERW AEMFPCMIAR NSTTEIISSG MGGTRNCALH LMQAELQLLS 420 PLVPVRKVTF LRFCKQHAEG VWAVVDVSVD RISDRGGSAS AQSSLSCRRL PSGCLVQDMP 480 NGYSKVTWID HTEYEETNIH HLYRPLVSSG LAFGSKRWIS SLQRQCESLT ILMSSTIPNR 540 NKPTPISSIG KKSMLKLAQR MTENFCRGVC ASSSQKWSKL DVGNIDEDVR IMTRKNVDGS 600 GEPPGILLSA ATSVWLPVSP RRLFDFLRDE LLRSEWDILS NGGPMQEIAN IFKGQDHSNS 660 VSLLRSTAMN ANQSSMLILQ ETSIDASGAI VVYAPVDIPA MHSVMNGADS AYVALLPSGF 720 AILPDGQAME ETGSLLTVAF QILVNSLPTA KLNVESIETV NNLISCTVQK IRAALRCDK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp4g27810 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013637557.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG1-like isoform X2 | ||||
Swissprot | Q9M2E8 | 0.0 | HDG1_ARATH; Homeobox-leucine zipper protein HDG1 | ||||
TrEMBL | A0A3P6BG64 | 0.0 | A0A3P6BG64_BRAOL; Uncharacterized protein | ||||
STRING | Bostr.25993s0196.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1128 | 27 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61150.1 | 0.0 | homeodomain GLABROUS 1 |
Publications ? help Back to Top | |||
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