PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g27510
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GRF
Protein Properties Length: 429aa    MW: 48104.2 Da    PI: 9.4217
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g27510genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.51.1e-2385127345
        WRC   3 epgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                ep rCrRtDGKkWRCs++vl  +k+CErH+hrgr+rsrk +e+
  Tp4g27510  85 EPTRCRRTDGKKWRCSNTVLLFQKYCERHMHRGRKRSRKLVES 127
                99*************************************9986 PP
2WRC69.54.3e-22306345140
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsr 40 
                d+epgrCrRtDGKkWRCs+++l+g+k+CE+H+hrg +++ 
  Tp4g27510 306 DNEPGRCRRTDGKKWRCSKDALSGQKYCEKHMHRGIKKKH 345
                68*********************************88764 PP
3QLQ35.23.9e-131953337
        QLQ  3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
               + aaQl ++ +Q+l+y+y+ a+  vP++L+++i++
  Tp4g27510 19 MKAAQLLEFQMQALVYRYIEAGIRVPHHLVVPIWN 53
               679*******************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.2E-41753IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166613.8311853IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.2E-72152IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.46883127IPR014977WRC domain
PfamPF088795.7E-2085126IPR014977WRC domain
PROSITE profilePS5166722.356306350IPR014977WRC domain
PfamPF088792.3E-18308346IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MQSPETEEKE RTRKKWPCMK AAQLLEFQMQ ALVYRYIEAG IRVPHHLVVP IWNSLALSSS  60
SSSSNYIIHH NHHSSSLLSD NVELEPTRCR RTDGKKWRCS NTVLLFQKYC ERHMHRGRKR  120
SRKLVESSSY DVALSSASTK HEETDGLDIR NESGNVFHGT MSVSSNAQVV TIASLPSSRV  180
CDNNTRPSLV ITESTNKSVS YGNRSRRTME MSYDDFIKQR DSTMCARGLP VQGCERLPSV  240
HKFFPEASDI SLEAAKFSSN RKNDIIARSR EWRSMNLGGL FPGIHISPDT VLQDQGGFRL  300
HRVETDNEPG RCRRTDGKKW RCSKDALSGQ KYCEKHMHRG IKKKHPVEAT NSHENAGFIP  360
LTVKTAARSV SCKDGDGQKN SVSVLGIPLS RVSDKKSTSS CSTDTTITDI ALRAEVDNEE  420
VLSLCSSGV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116123GRKRSRKL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269|PubMed:21036927}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g27510
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013632347.10.0PREDICTED: growth-regulating factor 9
SwissprotQ8S9M30.0GRF9_ARATH; Growth-regulating factor 9
TrEMBLA0A0D3C6E50.0A0A0D3C6E5_BRAOL; Uncharacterized protein
STRINGBo4g195580.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137602024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45480.10.0growth-regulating factor 9
Publications ? help Back to Top
  1. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]