PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g27180
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 340aa    MW: 38875.9 Da    PI: 5.4024
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g27180genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00041426123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ykC  C ksF +   L  H+r+H
  Tp4g27180  4 YKCRFCFKSFINGRALGGHMRSH 26
               9*********************9 PP
2zf-C2H215.35.8e-05212234123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC+ Cgk+F++   L  H  +H
  Tp4g27180 212 FKCETCGKVFKSYQALGGHRASH 234
                89***********9999998887 PP
3zf-C2H212.40.00047265287123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++Cp+C ++F++   L  H r+H
  Tp4g27180 265 HQCPICFRVFTSGQALGGHKRSH 287
                79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.75E-5327No hitNo description
PfamPF139128.2E-4327IPR007087Zinc finger, C2H2
SMARTSM003550.036426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93426IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576674.73E-9211287No hitNo description
PfamPF139122.2E-11211236IPR007087Zinc finger, C2H2
SMARTSM003550.013212234IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.676212239IPR007087Zinc finger, C2H2
PROSITE patternPS000280214234IPR007087Zinc finger, C2H2
SMARTSM003550.08265287IPR015880Zinc finger, C2H2-like
PfamPF139124.0E-10265287IPR007087Zinc finger, C2H2
PROSITE profilePS501579.473265292IPR007087Zinc finger, C2H2
PROSITE patternPS000280267287IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MERYKCRFCF KSFINGRALG GHMRSHMLSL SAKRELYELT GEEEEERPSQ LSYDDTESDA  60
SSSSDEEEED HGNCGEFDDP KSGRLQMVDG KEMEFDFADD DVESETESSR INPTRRRSKR  120
TRKLGSFDFE FKKLKMSQTG ESMTEPEHHS SASDTTTEED LAFCLIMLSK DKWKQQRNKT  180
TKQTVEEEEE DETDHECDNY KSSKNRGRIG RFKCETCGKV FKSYQALGGH RASHKKNKTC  240
TTMKSTKTEQ EKTEYGNGVT EKKIHQCPIC FRVFTSGQAL GGHKRSHGSN NIGAGRGLAV  300
NQVVRTAKEE EEVLVKQRMI DLNLPAPNEE DETSVVFDEW
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g27180
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882791.11e-163zinc finger protein ZAT4
SwissprotQ9SHD01e-143ZAT4_ARATH; Zinc finger protein ZAT4
TrEMBLD7LBV61e-161D7LBV6_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__2705__AT2G45120.11e-162(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.11e-138C2H2-like zinc finger protein