PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g27020
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 291aa    MW: 31489.6 Da    PI: 4.646
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g27020genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-1890139255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  Tp4g27020  90 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 139
                69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.3E-3890153IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2190147IPR016177DNA-binding domain
PfamPF008471.1E-1290139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-3190148IPR001471AP2/ERF domain
PROSITE profilePS5103223.22290147IPR001471AP2/ERF domain
CDDcd000186.16E-3291149No hitNo description
PRINTSPR003672.5E-1091102IPR001471AP2/ERF domain
PRINTSPR003672.5E-10113129IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
METQINIEKS ASQVTLTSSA IIAVSSSSSS SSSFPATSLS SSTTSSSSSS SFPEDANSKR  60
QASRRSLAVQ EDDANVVKRR KTSGGDKHPT YRGVRMRSWG KWVSEIREPR KKSRIWLGTY  120
PTAEMAARAH DVAALAIKGT TAYLNFPELS AELPRPVTNS PKDIQAAATA AAVNWQDSGA  180
NSPRVNNSDV AELAEAEPNL AVMAQSLSGS VVCSSDITTQ ESSETSCGWT NSFANKDSDE  240
EKLFDLPDLF TDDGNEMMIR NDAFCYYPST WQLCGSDAGF RLEEPFFCLN D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1785148973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g27020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133691.11e-143PREDICTED: ethylene-responsive transcription factor ERF034-like
SwissprotQ8LBQ71e-123ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A397ZXC41e-141A0A397ZXC4_BRACM; Uncharacterized protein
TrEMBLM4C8381e-141M4C838_BRARP; Uncharacterized protein
STRINGBra000366.1-P1e-142(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-113ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]