PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g26980
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HD-ZIP
Protein Properties Length: 329aa    MW: 35302.4 Da    PI: 8.84
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g26980genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13e-18159213256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                rk+ +++keq  +Lee F+++++++ +++  LAk+l+L +rqV vWFqNrRa+ k
  Tp4g26980 159 RKKLRLSKEQALVLEETFKEHSTLNPKQKLALAKQLNLRTRQVEVWFQNRRARTK 213
                778899***********************************************98 PP
2HD-ZIP_I/II1231.4e-39159248191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlskeq+ +LEe+F+e+++L+p++K +la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+een+rL+kev+eLr +l
    Tp4g26980 159 RKKLRLSKEQALVLEETFKEHSTLNPKQKLALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEVSELR-AL 248
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046182.6E-311118IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.2E-19139213IPR009057Homeodomain-like
SuperFamilySSF466891.15E-18143216IPR009057Homeodomain-like
PROSITE profilePS5007117.329155215IPR001356Homeobox domain
SMARTSM003893.0E-15157219IPR001356Homeobox domain
CDDcd000862.27E-14159216No hitNo description
PfamPF000469.8E-16159213IPR001356Homeobox domain
PROSITE patternPS000270190213IPR017970Homeobox, conserved site
PfamPF021831.7E-11215249IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.9E-26215258IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0009725Biological Processresponse to hormone
GO:0010218Biological Processresponse to far red light
GO:0005634Cellular Componentnucleus
GO:0009506Cellular Componentplasmodesma
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGERDDGLGL SLSLGLSQLK EPSLGLNLMP LTASSSSSSF PHMQNHNNNH LQKKIIHQNS  60
WPHLLQSSER NSDAGSFLRG FDVNRALPKA SVVDLEEEAA GASSPNSTVS SVSGNKRDLA  120
AARGGGGGDE NEAERASCSH GGGSGGSDEE DGGNGEGTRK KLRLSKEQAL VLEETFKEHS  180
TLNPKQKLAL AKQLNLRTRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCDN LTEENRRLQK  240
EVSELRALKL SPHLYMHMTP PTTLTMCPSC ERVSASSSTA AAAVAAPPPP SSSSAPSGGG  300
GRIPTVVGRP SPQRPTPWAA ISLQSRLAH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157163TRKKLRL
2207215RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g26980
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By transition from light to far-red light. {ECO:0000269|PubMed:8106086}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010506430.11e-176PREDICTED: homeobox-leucine zipper protein ATHB-4-like
SwissprotP929531e-154ATHB4_ARATH; Homeobox-leucine zipper protein ATHB-4
TrEMBLD7LBT71e-166D7LBT7_ARALL; Uncharacterized protein
STRINGXP_010506430.11e-175(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44910.11e-103homeobox-leucine zipper protein 4
Publications ? help Back to Top
  1. Carabelli M,Turchi L,Ruzza V,Morelli G,Ruberti I
    Homeodomain-Leucine Zipper II family of transcription factors to the limelight: central regulators of plant development.
    Plant Signal Behav, 2014.
    [PMID:23838958]
  2. Francisco M, et al.
    Genome Wide Association Mapping in Arabidopsis thaliana Identifies Novel Genes Involved in Linking Allyl Glucosinolate to Altered Biomass and Defense.
    Front Plant Sci, 2016. 7: p. 1010
    [PMID:27462337]
  3. Gallemí M, et al.
    A non-DNA-binding activity for the ATHB4 transcription factor in the control of vegetation proximity.
    New Phytol., 2017. 216(3): p. 798-813
    [PMID:28805249]