PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g26940
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 239aa    MW: 26354 Da    PI: 6.2828
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g26940genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-19103154155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                ++y+GVr+++ +g+++AeIrdp++ng  +r++lg++ t+e+Aa a+++a+ +l+g
  Tp4g26940 103 TQYRGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYETPEDAAVAYDRAAFQLKG 154
                58********.***********9998..***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.31E-30103164No hitNo description
SMARTSM003803.7E-36104168IPR001471AP2/ERF domain
PROSITE profilePS5103223.907104162IPR001471AP2/ERF domain
PfamPF008474.8E-13104154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-32104163IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23104163IPR016177DNA-binding domain
PRINTSPR003674.8E-13105116IPR001471AP2/ERF domain
PRINTSPR003674.8E-13144164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSDFDYNDAT SSADSVNNGV NSPVFYRNPS FSSVILNDNW SDLPLSVDDS QDMAIYNTLR  60
DAVSSGWTPT VPPLSSPAVE DKAETVVAEA SGSHAPPPRQ KGTQYRGVRR RPWGKFAAEI  120
RDPKKNGARV WLGTYETPED AAVAYDRAAF QLKGSKAKLN FPHLIGTCKY EPVRIRPRRR  180
SPEPSVSDYF SPGKKNVGHV DDGESRFVAS DLDFTVDQFY SNGGYLMDQA ACSSSDNRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-31101162263ATERF1
3gcc_A6e-31101162263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00311DAPTransfer from AT2G44840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g26940
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144089.11e-136PREDICTED: ethylene-responsive transcription factor 13-like
RefseqXP_013636620.11e-136PREDICTED: ethylene-responsive transcription factor 13
RefseqXP_013692148.11e-136ethylene-responsive transcription factor 13
SwissprotQ8L9K11e-132ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A397ZAK51e-136A0A397ZAK5_BRACM; Uncharacterized protein
STRINGBra004873.1-P1e-136(Brassica rapa)
STRINGBo4g024140.11e-136(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-119ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]