PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g25590

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

Nin-like

Protein Properties

Length: 923aa MW: 101833 Da PI: 5.3581

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g25590	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.3	7.4e-29	578	628	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l+++Fs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ Tp4g25590 578 EKNVSLSVLQQHFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 628 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.847	567	648	IPR003035	RWP-RK domain
Pfam	PF02042	1.3E-27	580	628	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.85E-23	814	908	No hit	No description
Gene3D	G3DSA:3.10.20.240	6.2E-24	821	902	No hit	No description
SMART	SM00666	2.0E-25	823	905	IPR000270	PB1 domain
PROSITE profile	PS51745	21.699	823	905	IPR000270	PB1 domain
Pfam	PF00564	1.0E-17	824	904	IPR000270	PB1 domain
CDD	cd06407	2.77E-38	824	904	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 923 aa Download sequence Send to blast
MEHPFSSREK GFVYPDIPTE QMDGLSFGSG LRNLISDDML NSSSSSELMN FDSFPTWCNS 60 PSAADILFAQ YGLSTSQPMA FGALTSLHAA EPKAATFSGL TRPFHDLENS YYGEERSLDS 120 NELSGKRLRV ANQKNGFPNL LNCTIPRSLS HSLDEKMLKA LSLFIESSGS GEGILAQIWT 180 PIKTGDQYLL STCDQAYLLD PRLSQYREVS RKFTFACEAN QCSFPGLPGR VFISGEREWT 240 SNVMYYKTDE YLRMKHAIDN EVRGSIAIPI LEASGKTCCA VMELVTSKEK TNFDMEMDSV 300 CRALQAVNLR TSAIPRPQYL SSNQRDALAE IQDVLRAVCH AHKLPLALAW IPCSFGKGGN 360 DHSVRVYGPT SDENCVLCVE ETACYVNDME MEGFVHACLE HCLREKEGIV GKAFVSNQPF 420 FSSDVKAYDI SDYPLVQHAR KYGLNAAVAI KLRSDCTGED DYILELFLPL SMKGSLEQQL 480 LLDGLSGTMQ RICRTLRTVS DVGATKKEVT RAGFRNGEMS SFPQTTCLGN YQTIHNSTKS 540 IFSDMSSDKE NGSTGSQGTS EQDMSKARTP EKKKSTTEKN VSLSVLQQHF SGSLKDAAKS 600 LGVCPTTLKR ICRQHGIMRW PSRKINKVNR SLKKIQTVLD SVQGVEGGLK FDSATGEFVA 660 VGPFIQEFDT QKGPSSNGNN PHVRGQQDMA EDTLFELLEA KSADNAVKLE EDITMNQAGR 720 GSFMEVNASG QQWAWMAEQS CFNSSEGIKN NGNLSSQAIA DGMDTTIRCS GNTYEDNRSM 780 SCSVSDSSNG SGAVMLGSSS NSMEEWNQMR TRKSNSCESG PTTLTVKATY REDTIRFKFE 840 PSVGCPQLYK EVGKRFKLQD GLFQLKYLDD EEEWVMLVTD SDLQECLEIL YGMGKQTVKF 900 LVRDLPAPIG SSAGSNVYLG TGL

Sequence ? help Back to Top

Protein Sequence Length: 923 aa Download sequence Send to blast

MEHPFSSREK GFVYPDIPTE QMDGLSFGSG LRNLISDDML NSSSSSELMN FDSFPTWCNS  60
PSAADILFAQ YGLSTSQPMA FGALTSLHAA EPKAATFSGL TRPFHDLENS YYGEERSLDS  120
NELSGKRLRV ANQKNGFPNL LNCTIPRSLS HSLDEKMLKA LSLFIESSGS GEGILAQIWT  180
PIKTGDQYLL STCDQAYLLD PRLSQYREVS RKFTFACEAN QCSFPGLPGR VFISGEREWT  240
SNVMYYKTDE YLRMKHAIDN EVRGSIAIPI LEASGKTCCA VMELVTSKEK TNFDMEMDSV  300
CRALQAVNLR TSAIPRPQYL SSNQRDALAE IQDVLRAVCH AHKLPLALAW IPCSFGKGGN  360
DHSVRVYGPT SDENCVLCVE ETACYVNDME MEGFVHACLE HCLREKEGIV GKAFVSNQPF  420
FSSDVKAYDI SDYPLVQHAR KYGLNAAVAI KLRSDCTGED DYILELFLPL SMKGSLEQQL  480
LLDGLSGTMQ RICRTLRTVS DVGATKKEVT RAGFRNGEMS SFPQTTCLGN YQTIHNSTKS  540
IFSDMSSDKE NGSTGSQGTS EQDMSKARTP EKKKSTTEKN VSLSVLQQHF SGSLKDAAKS  600
LGVCPTTLKR ICRQHGIMRW PSRKINKVNR SLKKIQTVLD SVQGVEGGLK FDSATGEFVA  660
VGPFIQEFDT QKGPSSNGNN PHVRGQQDMA EDTLFELLEA KSADNAVKLE EDITMNQAGR  720
GSFMEVNASG QQWAWMAEQS CFNSSEGIKN NGNLSSQAIA DGMDTTIRCS GNTYEDNRSM  780
SCSVSDSSNG SGAVMLGSSS NSMEEWNQMR TRKSNSCESG PTTLTVKATY REDTIRFKFE  840
PSVGCPQLYK EVGKRFKLQD GLFQLKYLDD EEEWVMLVTD SDLQECLEIL YGMGKQTVKF  900
LVRDLPAPIG SSAGSNVYLG TGL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g25590

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY102562	0.0	AY102562.1 Arabidopsis thaliana hypothetical protein (At2g43500/T1O24.24) mRNA, complete cds.
GenBank	AY102563	0.0	AY102563.1 Arabidopsis thaliana hypothetical protein (At2g43500/T1O24.24) mRNA, complete cds.
GenBank	AY649251	0.0	AY649251.1 Arabidopsis thaliana hypothetical protein (At2g43500) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006397520.1	0.0	protein NLP8
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	V4LGT8	0.0	V4LGT8_EUTSA; Uncharacterized protein
STRING	XP_006397520.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]