PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g25270
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 318aa    MW: 34432.9 Da    PI: 8.1752
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g25270genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11252297655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR ri  ++ +L+el+P+     +k  s a++L +Ave+Ik Lq
  Tp4g25270 252 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVEHIKGLQ 297
                689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.056246296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-14249310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.68E-11250301No hitNo description
Gene3DG3DSA:4.10.280.102.5E-13251308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-9252297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-12252302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MYPPSSSSSK STAPDGGDAE NNRYDSATGA TRDFSSLGSQ THHNLPRSSP PRHHHNPNVV  60
GLGHYFSGDP SNIGFDSGAS SSSSSSPLFR HRSSPAGFCD QHLPIDPNEG TGFSLGRPNG  120
GYNGGGERGP SRLKSEMRFS GGSNSSHQEH NSLPQISEVE AAAAATNGVA STSMSFGNDH  180
NNWGNSSSHI SFTIDEPGKR SKTTDFFTLE TQFSMPQTSL EMARMESLMN IPEDSVACRI  240
RAKRGCATHP RSIAERERRT RISGKLKKLQ ELVPNMDKQT SYADMLDLAV EHIKGLQQRV  300
ESLEKGMERC TCGACKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g25270
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0044502e-93AC004450.3 Arabidopsis thaliana chromosome 2 clone F14B2 map CIC10F02, complete sequence.
GenBankCP0026852e-93CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434880.11e-176PREDICTED: transcription factor bHLH129-like isoform X1
SwissprotQ9ZW811e-139BH129_ARATH; Transcription factor bHLH129
TrEMBLR0HDD91e-173R0HDD9_9BRAS; Uncharacterized protein
STRINGXP_010508466.11e-174(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103291833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43140.21e-150bHLH family protein