PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp4g24580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | LBD | ||||||||
Protein Properties | Length: 199aa MW: 22422.1 Da PI: 6.6916 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.3 | 1.3e-38 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +C aCk+lrrkC ++Cv+apyf+++q +++fa++h++FGasn +kll++lp e+r +a+ +++yeA+ar++dP+yG++++i++lqqq+ +l+a+l+ lk+ Tp4g24580 7 PCGACKFLRRKCIHGCVFAPYFCHDQgASHFAAIHQVFGASNASKLLSHLPMEDRCEAAITIYYEAQARLQDPIYGCISHIFSLQQQVVNLQAQLEILKQ 106 7*************************89*********************************************************************999 PP DUF260 100 e 100 + Tp4g24580 107 Q 107 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.941 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.8E-36 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MAGSGSPCGA CKFLRRKCIH GCVFAPYFCH DQGASHFAAI HQVFGASNAS KLLSHLPMED 60 RCEAAITIYY EAQARLQDPI YGCISHIFSL QQQVVNLQAQ LEILKQQATQ SMMATNTPSL 120 ENPNYYRDIK LQQLQQSLDL HRHHNNHHQD TSLETESNSD LKNIMTSYPD LDQHLNTFNQ 180 YHNGGNDILS ASFGYISYS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-34 | 3 | 102 | 7 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-34 | 3 | 102 | 7 | 105 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp4g24580 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473848 | 1e-149 | AB473848.1 Arabidopsis thaliana ASL15 mRNA for ASYMMETRIC LEAVES2-like 15 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013690686.1 | 1e-129 | LOB domain-containing protein 17-like | ||||
Refseq | XP_013747423.1 | 1e-129 | LOB domain-containing protein 17-like | ||||
Swissprot | Q9SLB6 | 1e-100 | LBD17_ARATH; LOB domain-containing protein 17 | ||||
TrEMBL | A0A078FPN0 | 1e-128 | A0A078FPN0_BRANA; BnaC04g48290D protein | ||||
STRING | Bo4g191540.1 | 1e-127 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 3e-92 | LBD family protein |
Publications ? help Back to Top | |||
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