PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp4g24560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | C2H2 | ||||||||
Protein Properties | Length: 212aa MW: 24059.2 Da PI: 8.8301 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.9e-05 | 48 | 70 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Tp4g24560 48 YTCSFCRREFRSAQALGGHMNVH 70 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.15E-6 | 45 | 74 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.8E-4 | 46 | 73 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0061 | 48 | 70 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.219 | 48 | 75 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 50 | 70 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MKRTHLASFS SRNETQEEEG DTNGNDRIIM NHYKNYEAGL IPWPPKNYTC SFCRREFRSA 60 QALGGHMNVH RRDRAKLRQI PSWLFEPHHH IPLPNPKPNP NSSSSSSTTP APLEPSLTNQ 120 ISRTTPFSSD RFHLLDNTTS YGGLVVEREK IKNNVCSREL KKSAMDSCHA ARCEISRGDL 180 MNMKDGVMGL EVGMDLRNPK QVLDLELRLG CL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 8e-13 | 43 | 70 | 2 | 29 | superman protein |
2l1o_A | 8e-13 | 43 | 70 | 2 | 29 | Transcriptional regulator SUPERMAN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may regulate cell division and growth. {ECO:0000269|Ref.4}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp4g24560 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC155337 | 0.0 | AC155337.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH117N09, complete sequence. | |||
GenBank | AC189220 | 0.0 | AC189220.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010H06, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009142836.1 | 1e-127 | PREDICTED: transcriptional regulator SUPERMAN | ||||
Swissprot | Q9SLB8 | 1e-121 | ZFP11_ARATH; Zinc finger protein 11 | ||||
TrEMBL | M4CKF7 | 1e-126 | M4CKF7_BRARP; Uncharacterized protein | ||||
STRING | Bra004692.1-P | 1e-127 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9575 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42410.1 | 1e-111 | zinc finger protein 11 |