PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g24550
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family VOZ
Protein Properties Length: 489aa    MW: 54961.4 Da    PI: 5.6109
Description VOZ family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g24550genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1VOZ4173.3e-1282254382215
        VOZ   2 ppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdlsll 101
                ppsaflgpkcalwdc+rpaqgs+w+ dycs +h +lalne++pgt+pvlrp+gi+lkd+ll++al+ak  gk+vgip+cega+++k+pwnaaelf+l+l+
  Tp4g24550 225 PPSAFLGPKCALWDCARPAQGSDWYLDYCSDYHGNLALNEDSPGTAPVLRPGGISLKDNLLIDALRAKSLGKNVGIPVCEGAVNTKCPWNAAELFHLELV 324
                7*************************************************************************************************** PP

        VOZ 102 egetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgkvs 201
                egetirewlffdkprra++sgnrkqrslpdysgrgwhesrkq+mke++g+krsyymdpqp+++fewhl+ey+ine+d +alyrlelkl+++kks+kgkv+
  Tp4g24550 325 EGETIREWLFFDKPRRAYDSGNRKQRSLPDYSGRGWHESRKQLMKEQEGQKRSYYMDPQPPGHFEWHLFEYQINESDVCALYRLELKLTNGKKSPKGKVA 424
                **************************************************************************************************** PP

        VOZ 202 kdsladlqkklgrl 215
                kd+ladlqkk+ ++
  Tp4g24550 425 KDPLADLQKKMEKM 438
                ***********986 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048578Biological Processpositive regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MSNHPKITCL SSAHQNLVEK LMQLQERFCH LQAARKEGRL SDHALLEAQI SQNLREWQAE  60
LSAPSPESSL LGGSISQFSE EIARLLKLND EEDDATSSLK EHAPPKPGGF DQSLCPPEHL  120
DWTAEPFCQS PFNVNFSSGF EDAVNNTETH DQQLHFAFNE FDPSINTAPD FHGQKLSNLD  180
ITSQLDYHLS EVRQEFNNSP SIKLDVSEES ESYAEFTTPS SVRVPPSAFL GPKCALWDCA  240
RPAQGSDWYL DYCSDYHGNL ALNEDSPGTA PVLRPGGISL KDNLLIDALR AKSLGKNVGI  300
PVCEGAVNTK CPWNAAELFH LELVEGETIR EWLFFDKPRR AYDSGNRKQR SLPDYSGRGW  360
HESRKQLMKE QEGQKRSYYM DPQPPGHFEW HLFEYQINES DVCALYRLEL KLTNGKKSPK  420
GKVAKDPLAD LQKKMEKMGQ LTPEVASDKP SPPTKGRTKA TKGLQLMSQT IIQTSRDGFS  480
TSFYLSNIR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ1 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Binds as a dimer to the palindromic sequence 5'-GCGTNNNNNNNACGC-3'. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00018PBMTransfer from AT2G42400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g24550
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By far-red light. Down-regulated by far-red light (at protein level). {ECO:0000269|PubMed:22904146}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013687880.10.0transcription factor VOZ2
RefseqXP_013687881.10.0transcription factor VOZ2
RefseqXP_022557286.10.0transcription factor VOZ2
SwissprotQ9SLB90.0VOZ2_ARATH; Transcription factor VOZ2
TrEMBLA0A078FPJ90.0A0A078FPJ9_BRANA; BnaC04g48260D protein
TrEMBLA0A3P6CCF50.0A0A3P6CCF5_BRAOL; Uncharacterized protein
STRINGXP_006411498.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110602534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42400.10.0vascular plant one zinc finger protein 2
Publications ? help Back to Top
  1. Yasui Y,Kohchi T
    VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis.
    Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5
    [PMID:25351333]
  2. Koguchi M,Yamasaki K,Hirano T,Sato MH
    Vascular plant one-zinc-finger protein 2 is localized both to the nucleus and stress granules under heat stress in Arabidopsis.
    Plant Signal Behav, 2017. 12(3): p. e1295907
    [PMID:28277968]
  3. Kumar S,Choudhary P,Gupta M,Nath U
    VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition.
    Plant Physiol., 2018. 176(4): p. 2917-2930
    [PMID:29507119]