PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g24450
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 367aa    MW: 40811.3 Da    PI: 7.0016
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g24450genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.79e-13299344655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  Tp4g24450 299 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 344
                689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.25293343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-15296357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.99E-12297346No hitNo description
Gene3DG3DSA:4.10.280.101.3E-13298354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-10299344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-12299349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDSNTHNHLY DPNQSSSGSG LLRFRSAPSS VLAAFVDHDK SGFDSDRLFS RFVSSNGGND  60
DLGSPNPSEF EDKSPVTSVS YAATLPPPQH EPSSFLGLPP HYPRQSKGMM NTIGLDQFLG  120
VNNHHTKPVE SNLLRQSSSP AGMFTNLSDQ NGYGSMRSLM NYVGEEEDEE SPSNSNGLRR  180
HSSLSSRPPS SLGMLSQIPE IASESIATSF QYSHWNDPSS FIDNLSSLKR EREDDGKLFH  240
GAQNGESGNR MQLLSHHLSL PKSSSTASDM VSVDKYLQLQ DSVPCKIRAK RGCATHPRSI  300
AERVRRTRIS ERMRKLQELV PNMDKQTNTA DMLDLAVDYI KDLQRQYTIL NENRANCKCM  360
NKEKNLI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g24450
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531630.0AK353163.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-22-A04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881830.10.0transcription factor bHLH130 isoform X2
SwissprotQ66GR30.0BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A1J3EZD00.0A0A1J3EZD0_NOCCA; Uncharacterized protein
STRINGBostr.25993s0551.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62932745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]