PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g22550
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 253aa    MW: 28195.7 Da    PI: 7.7935
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g22550genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.2e-1366112354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                r+h  +E+rRRdriNs ++ Lr+l+P++      Kl+Ka+ L  ++e +k+L
  Tp4g22550  66 RSHRLAEKRRRDRINSHLSALRKLVPNS-----DKLDKAALLATVIEQVKEL 112
                68*************************8.....7*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.01E-1362118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.38363112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.06E-1266115No hitNo description
PfamPF000101.6E-1066112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-1467118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-1169118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00766147221No hitNo description
PROSITE profilePS516718.65151227IPR002912ACT domain
Gene3DG3DSA:3.30.70.2603.0E-4153215No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MDNSYDSVAK WSDSASPYNM VSWSLQSDSS DSDFSRFNLG FSSSSSGNFP VNEFVGGIEK  60
AESLSRSHRL AEKRRRDRIN SHLSALRKLV PNSDKLDKAA LLATVIEQVK ELKQKATESP  120
IFQELPTEAD EVTVQPETIS NDFESETIIF KASFCCEDQP EAISEIIRVL TKFQLETIQA  180
EIICVGGRMR INFILRGSNC KETTSVAALA KALKQSLCAA LNRITSSSSS STSSVCRIRS  240
KRQRWFLSSH YSQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g22550
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411274.11e-149transcription factor bHLH51
SwissprotQ9XEF01e-147BH051_ARATH; Transcription factor bHLH51
TrEMBLV4MC331e-148V4MC33_EUTSA; Uncharacterized protein
STRINGXP_006411274.11e-148(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68062542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-126bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]