PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g22490
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 603aa    MW: 66686.1 Da    PI: 7.8699
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g22490genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74.1e-08260280526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C+ f++ G C+ Gd+C +aHg
  Tp4g22490 260 PCPEFRK-GSCPKGDSCEYAHG 280
                8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484035.29E-1375159IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.74377175IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.1E-1577176IPR020683Ankyrin repeat-containing domain
SMARTSM002480.001977107IPR002110Ankyrin repeat
PfamPF136373.4E-778130No hitNo description
CDDcd002049.45E-1379175No hitNo description
SMARTSM002480.056112144IPR002110Ankyrin repeat
SMARTSM003568.4E-6255281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.145255282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-6260282IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5260280IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.465290314IPR000571Zinc finger, CCCH-type
SMARTSM0035637290313IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MCGSKSNLCS SKTLTEAEFM RRKSEEEGLA AATCLLEFAA CDDLPSFRRE MEEKSPEIDE  60
PGFWYCRRVG SKKMGFEERT PLMVAATYGS IEVLNYIIAT GKSDVNRVSG DEKVTALHCA  120
VSGCSVSVVE VIKILLDASA SPNCVDANGN KPIDLLVRAS RFVPNQSRKA VELLLTGNHG  180
SVSLMEEEEV KSVVTKYPAD ASLPDINEGV YGTDEFRMFS FKVKPCSRAY SHDWTECPFV  240
HPGENARRRD PRKYPYSCVP CPEFRKGSCP KGDSCEYAHG VFESWLHPAQ YRTRLCKDET  300
GCARRVCFFA HRRDELRPVN ASTGSAMVSP RSSNQSPEMS VMSPLTLGSS PMNSPMANNG  360
VPLSPRNGGL WQNRVNSLTP PPLQLNGSRL KSSLSARDMD IEMELRLRGL DNRRLSDLKP  420
SNLEETFGSY DSSSVMQLHS PSRHSQINHY PSSPIRQPPP QGFESSAAMA AAVMNARSSA  480
FAKRSLSFKP GPVASSNVSD WGSPNGKLEW GMQREELNKL RRSASFGIHG NNNNASRPVR  540
DYSDEPDVSW VNSLVKESAP ERAFGLNERV GNAVNGAAVR EKFKLPSWAE QMYIDHEKQQ  600
IVA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g22490
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545950.0AC254595.1 Capsella rubella clone CAP16-M18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293865.10.0zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLR0HRW60.0R0HRW6_9BRAS; Uncharacterized protein
STRINGBostr.23794s0043.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein