PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g22170
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 381aa    MW: 42161.8 Da    PI: 8.227
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g22170genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-164893147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++e d  l ++v++lG+++W+ I+r ++ gR++k+c++rw + 
        Tp4g22170 48 KGPWSPEQDAVLTRLVNKLGPRNWTMISRGIP-GRSGKSCRLRWCNQ 93
                     79******************************.***********985 PP
2Myb_DNA-binding51.22.9e-16100143146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+++T eE+ l+  a++ +G++ W+ Ia+ +  gRt++ +k++w++
        Tp4g22170 100 RKPFTDEEEHLIMSAHAIHGNK-WSVIAKLLR-GRTDNAIKNHWNS 143
                      789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.0424394IPR017930Myb domain
SuperFamilySSF466898.61E-2945141IPR009057Homeodomain-like
SMARTSM007171.4E-134796IPR001005SANT/Myb domain
PfamPF002491.6E-144893IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2349101IPR009057Homeodomain-like
CDDcd001671.71E-125092No hitNo description
PROSITE profilePS5129424.31595149IPR017930Myb domain
SMARTSM007173.4E-1399147IPR001005SANT/Myb domain
PfamPF002491.3E-14100143IPR001005SANT/Myb domain
CDDcd001671.00E-9102142No hitNo description
Gene3DG3DSA:1.10.10.601.7E-22102148IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MTGEIDGLML PANPSTAFDE LEDAINTAVD AELAELANGG DGGSSKAKGP WSPEQDAVLT  60
RLVNKLGPRN WTMISRGIPG RSGKSCRLRW CNQLDPCLKR KPFTDEEEHL IMSAHAIHGN  120
KWSVIAKLLR GRTDNAIKNH WNSALKRKQA DLWKNHQLVS NTVTPCIKET MVVRKIPNAS  180
PKEYLNREET NSSNHLILAD DKVDDQANKP REQNCKLGVH RPVARIGAFS VFKPGYMNHH  240
MAPCEGPLVK ASRPDSLAGK FLQSLCYEPN IPSKCGHGCC IHPDKAPSSS CNSVLGPEFV  300
DYEEPSSAAL DQELVSIATD LNNIAWIRSG VNKSYFREVE QSLKADNHFH LEHARARAKF  360
TGIVNNGISS QMVRQDLRAF S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-34471486107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g22170
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411228.10.0transcription factor MYB25
SwissprotO041921e-165MYB25_ARATH; Transcription factor MYB25
TrEMBLV4P0A60.0V4P0A6_EUTSA; Uncharacterized protein
STRINGXP_006411228.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56382747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39880.11e-168myb domain protein 25
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]