PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g20110
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 303aa    MW: 34131.2 Da    PI: 8.6596
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g20110genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000443961123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y C+ C + F++   L  H+++H
  Tp4g20110 39 YACSFCRREFRSAQALGGHMNVH 61
               89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.66E-63665No hitNo description
PROSITE profilePS5015711.1773966IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEKPGGFLIP RKSNQESSWE ELAFAEDDAA GSLWPPRSYA CSFCRREFRS AQALGGHMNV  60
HRRDRARLKQ SDDQYLFSKS SSPEYPSHKN NDDIRETSCY TLVFNSNPKR FKPQHSCVID  120
LSSSTSSLPY LTPSRVSPGL PRKQDTSSSS PSFVKEPSNN SKKILSSSPW SCPATFVEQK  180
RCNLYELPVM EESKKRKERD VPKNGDKAKA NLGNTTDLSV RMNLVIHQGF PITAQEGDEE  240
IGSDDLLKRR RMRESSSPPS IFISSLSCKS AIVTRNEEIK HKGDHFEDLD LELRLGADPQ  300
KGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A9e-133461229superman protein
2l1o_A9e-133461229Transcriptional regulator SUPERMAN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g20110
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893070.0AC189307.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB033O04, complete sequence.
GenBankAC1895100.0AC189510.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB089D07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410965.11e-175zinc finger protein 10
SwissprotO809421e-155ZFP10_ARATH; Zinc finger protein 10
TrEMBLV4MIL61e-174V4MIL6_EUTSA; Uncharacterized protein
STRINGXP_006410965.11e-175(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110472534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-138zinc-finger protein 10