PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g20010

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

GRAS

Protein Properties

Length: 727aa MW: 81831.7 Da PI: 7.0089

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g20010	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	373	3.9e-114	353	722	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l++lL++cA+av+++d ++a +lL++++++++p gd +qRla++f+++L+arla+++s++yk + +++ s + +l+a++lf ++P+ k+s++++N+ Tp4g20010 353 LRSLLIHCAQAVAADDSRCAGQLLKQIRQHSTPFGDGNQRLAHCFANGLEARLAGTGSQIYKGIVSKPRS---AAAVLKAHQLFLACCPFRKLSYFITNK 449 689*************************************************************9999...999******************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 +I + v ++ rvH+iDf+i +G+QWp+L++ ++ g+p++RiTg++ p++g ++++eetg+rLa +A+++gvpfe+++ +ak++++++le+L++++ Tp4g20010 450 TIRDLVGKSPRVHVIDFGILYGFQWPTLIHRFSM--YGSPKVRITGIEFPQPGfrPAQRVEETGQRLAAYAKHFGVPFEYKA-IAKKWDAIQLEDLDIDR 546 *****************************9..8***********9*************************.7************ PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 +E ++Vn+ ++ ++l+desv++es+rd+vL+l+ ++sP+++v+ + +n++ F++rf eal ++s++fd+l++ +pre+ er+++E e++gre+ nv+ Tp4g20010 547 DEITVVNCLYRAENLHDESVKVESCRDAVLSLIGKISPDLFVFGTVNGAYNAPFFVTRFREALFHFSSIFDMLDTVVPREDGERMFLEMEVFGREALNVI 646 ************************************************************************************************ PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 aceg er+er et+++W+ r +++G+ +vp++ +++k+ +++++ + + +++++ +l++gWk+r+++++S+W+ Tp4g20010 647 ACEGWERVERPETYKQWHVRAMRSGLVQVPFDPSIMKTSLDKVHTFYHKDFVIDQDNRWLLQGWKGRTVMALSVWK 722 *******************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.297	327	702	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-111	353	722	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 727 aa Download sequence Send to blast
MITDPGLNGL SGAISRTRLP DQSSSLLPNH SFTPVTVLDG FNYNHLSDNR NTVVTSAPDN 60 SAFTRGEEEE DPADEFDFSD AVLGYISQML MDEDMEDKAC MLQESLDLEA AERSLYEAIG 120 KKYPPSPEPN LAFAERNSES LDHVVPRNYT GDRIGSSGFI ARNGGIKPMS GFTLDFRNPQ 180 SRSPVLSVPQ SSYSSSNDLI TTIHGDGFEE SSNALYHPDA NRESQWLFRR GLEEASRFLP 240 EKNELILNFR EENSSNKGRK KPYRDEIVVE EERCSKLPAV FPETISRSDV VDKILVHVPG 300 GEGMKEFDAL RDVLKKGVEK KKTLVPQEGK RRARGKGRGR GGGKNVKKEV VDLRSLLIHC 360 AQAVAADDSR CAGQLLKQIR QHSTPFGDGN QRLAHCFANG LEARLAGTGS QIYKGIVSKP 420 RSAAAVLKAH QLFLACCPFR KLSYFITNKT IRDLVGKSPR VHVIDFGILY GFQWPTLIHR 480 FSMYGSPKVR ITGIEFPQPG FRPAQRVEET GQRLAAYAKH FGVPFEYKAI AKKWDAIQLE 540 DLDIDRDEIT VVNCLYRAEN LHDESVKVES CRDAVLSLIG KISPDLFVFG TVNGAYNAPF 600 FVTRFREALF HFSSIFDMLD TVVPREDGER MFLEMEVFGR EALNVIACEG WERVERPETY 660 KQWHVRAMRS GLVQVPFDPS IMKTSLDKVH TFYHKDFVID QDNRWLLQGW KGRTVMALSV 720 WKPDSKA

Sequence ? help Back to Top

Protein Sequence Length: 727 aa Download sequence Send to blast

MITDPGLNGL SGAISRTRLP DQSSSLLPNH SFTPVTVLDG FNYNHLSDNR NTVVTSAPDN  60
SAFTRGEEEE DPADEFDFSD AVLGYISQML MDEDMEDKAC MLQESLDLEA AERSLYEAIG  120
KKYPPSPEPN LAFAERNSES LDHVVPRNYT GDRIGSSGFI ARNGGIKPMS GFTLDFRNPQ  180
SRSPVLSVPQ SSYSSSNDLI TTIHGDGFEE SSNALYHPDA NRESQWLFRR GLEEASRFLP  240
EKNELILNFR EENSSNKGRK KPYRDEIVVE EERCSKLPAV FPETISRSDV VDKILVHVPG  300
GEGMKEFDAL RDVLKKGVEK KKTLVPQEGK RRARGKGRGR GGGKNVKKEV VDLRSLLIHC  360
AQAVAADDSR CAGQLLKQIR QHSTPFGDGN QRLAHCFANG LEARLAGTGS QIYKGIVSKP  420
RSAAAVLKAH QLFLACCPFR KLSYFITNKT IRDLVGKSPR VHVIDFGILY GFQWPTLIHR  480
FSMYGSPKVR ITGIEFPQPG FRPAQRVEET GQRLAAYAKH FGVPFEYKAI AKKWDAIQLE  540
DLDIDRDEIT VVNCLYRAEN LHDESVKVES CRDAVLSLIG KISPDLFVFG TVNGAYNAPF  600
FVTRFREALF HFSSIFDMLD TVVPREDGER MFLEMEVFGR EALNVIACEG WERVERPETY  660
KQWHVRAMRS GLVQVPFDPS IMKTSLDKVH TFYHKDFVID QDNRWLLQGW KGRTVMALSV  720
WKPDSKA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-42	359	725	25	382	Protein SCARECROW
5b3h_A	1e-42	359	725	24	381	Protein SCARECROW
5b3h_D	1e-42	359	725	24	381	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g20010

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC004684	0.0	AC004684.3 Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006410955.1	0.0	scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	V4MIK6	0.0	V4MIK6_EUTSA; Uncharacterized protein
STRING	XP_006410955.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM358	27	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein